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Xenon in PDB 6fy9: The Crystal Structure of Encm Complex with Xenon Under 15 Bars Xe Pressure

Protein crystallography data

The structure of The Crystal Structure of Encm Complex with Xenon Under 15 Bars Xe Pressure, PDB code: 6fy9 was solved by R.Saleem-Batcha, R.Teufel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.11 / 3.65
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 80.768, 86.790, 132.459, 90.00, 90.00, 90.00
R / Rfree (%) 24.9 / 28

Xenon Binding Sites:

The binding sites of Xenon atom in the The Crystal Structure of Encm Complex with Xenon Under 15 Bars Xe Pressure (pdb code 6fy9). This binding sites where shown within 5.0 Angstroms radius around Xenon atom.
In total 2 binding sites of Xenon where determined in the The Crystal Structure of Encm Complex with Xenon Under 15 Bars Xe Pressure, PDB code: 6fy9:
Jump to Xenon binding site number: 1; 2;

Xenon binding site 1 out of 2 in 6fy9

Go back to Xenon Binding Sites List in 6fy9
Xenon binding site 1 out of 2 in the The Crystal Structure of Encm Complex with Xenon Under 15 Bars Xe Pressure


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 1 of The Crystal Structure of Encm Complex with Xenon Under 15 Bars Xe Pressure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe502

b:41.6
occ:1.00
CD A:ARG107 4.0 93.3 1.0
CG A:ARG107 4.2 93.3 1.0
CB A:ARG107 4.2 93.3 1.0
OG A:SER102 4.5 80.0 1.0
CD A:LYS100 4.5 80.6 1.0
O A:ARG107 4.6 78.8 1.0
C A:ARG107 4.6 78.8 1.0
CB A:SER102 4.8 80.0 1.0
OE2 A:GLU204 4.8 88.7 1.0
CG A:ARG109 4.8 82.7 1.0
CB A:LYS100 4.9 80.6 1.0
O A:LYS100 4.9 77.9 1.0
N A:ARG109 5.0 75.8 1.0
N A:ALA108 5.0 76.5 1.0
CD A:ARG109 5.0 82.7 1.0

Xenon binding site 2 out of 2 in 6fy9

Go back to Xenon Binding Sites List in 6fy9
Xenon binding site 2 out of 2 in the The Crystal Structure of Encm Complex with Xenon Under 15 Bars Xe Pressure


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 2 of The Crystal Structure of Encm Complex with Xenon Under 15 Bars Xe Pressure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe503

b:41.6
occ:1.00
CB A:ALA384 3.8 75.5 1.0
OE2 A:GLU354 3.9 85.5 1.0
C7M A:FAD501 4.3 74.0 1.0
CE A:MET79 4.4 86.3 1.0
CH2 A:TRP36 4.7 80.9 1.0
C7 A:FAD501 4.8 74.0 1.0
CD A:GLU354 4.8 85.5 1.0

Reference:

R.Saleem-Batcha, F.Stull, J.N.Sanders, B.S.Moore, B.A.Palfey, K.N.Houk, R.Teufel. Enzymatic Control of Dioxygen Binding and Functionalization of the Flavin Cofactor. Proc. Natl. Acad. Sci. V. 115 4909 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 29686059
DOI: 10.1073/PNAS.1801189115
Page generated: Sun Nov 1 12:24:00 2020

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