Xenon in PDB 5nsw: Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn.

The structure of Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn., PDB code: 5nsw was solved by G.Phan, T.Prange, Y.V.Enguene Ntsogo, C.Garnier, A.Ducruix, I.Broutin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.42 / 2.50
Space group	I 4
Cell size a, b, c (Å), α, β, γ (°)	256.412, 256.412, 81.395, 90.00, 90.00, 90.00
R / Rfree (%)	17.1 / 23.9

The structure of Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. also contains other interesting chemical elements:

Nickel	(Ni)	1 atom
Sodium	(Na)	1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 17;

Binding sites:

The binding sites of Xenon atom in the Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. (pdb code 5nsw). This binding sites where shown within 5.0 Angstroms radius around Xenon atom.
In total 17 binding sites of Xenon where determined in the Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn., PDB code: 5nsw:
Jump to Xenon binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Xenon binding site 1 out of 17 in the Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn.


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 1 of Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. within 5.0Å range: probe atom residue distance (Å) B Occ A:Xe503 b:55.4 occ:1.00 OD1 A:ASP409 3.6 28.1 1.0 OD1 C:ASP409 3.7 24.3 1.0 NH1 A:ARG412 3.8 41.5 1.0 OD1 B:ASP409 3.8 25.0 1.0 CD1 C:LEU405 3.9 31.3 1.0 CD1 A:LEU405 3.9 32.3 1.0 CD2 B:LEU405 4.0 35.2 1.0 CD2 C:LEU405 4.0 29.3 1.0 CD1 B:LEU405 4.0 28.1 1.0 CD2 A:LEU405 4.0 36.6 1.0 CG C:LEU405 4.1 31.2 1.0 CG A:LEU405 4.1 32.5 1.0 NH1 B:ARG412 4.1 37.4 1.0 NH1 C:ARG412 4.1 33.8 1.0 CG A:ASP409 4.1 31.3 1.0 CG B:LEU405 4.1 30.0 1.0 CG C:ASP409 4.1 32.0 1.0 CB A:ASP409 4.2 32.7 1.0 CG B:ASP409 4.3 31.6 1.0 CB C:ASP409 4.3 30.7 1.0 CB B:ASP409 4.4 31.8 1.0 CZ A:ARG412 4.9 39.3 1.0 OD2 C:ASP409 4.9 32.7 1.0 OD2 A:ASP409 5.0 32.0 1.0

Xenon binding site 2 out of 17 in the Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn.


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 2 of Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. within 5.0Å range: probe atom residue distance (Å) B Occ A:Xe504 b:67.2 occ:0.30 OE1 A:GLU411 3.1 46.1 1.0 O A:GLN177 3.7 37.2 1.0 O A:ALA201 3.8 33.5 1.0 CA A:ALA201 3.8 33.7 1.0 CB A:ALA201 3.9 29.2 1.0 CB A:SER180 3.9 44.5 1.0 CB A:GLN177 3.9 30.5 1.0 CG A:GLN177 4.0 32.9 1.0 CA A:GLN177 4.0 33.8 1.0 CG A:ARG204 4.1 50.6 1.0 CZ A:PHE404 4.2 32.6 1.0 CD A:GLU411 4.3 47.6 1.0 C A:GLN177 4.3 37.0 1.0 C A:ALA201 4.3 34.4 1.0 CB A:ARG204 4.4 37.8 1.0 N A:ARG181 4.5 37.4 1.0 OG A:SER180 4.7 49.5 1.0 CD1 A:LEU408 4.8 41.8 1.0 CD A:GLN177 4.8 36.6 1.0 OE2 A:GLU411 4.8 42.2 1.0 OE1 A:GLN177 4.9 45.6 1.0 CE1 A:PHE404 4.9 30.4 1.0 N A:LEU205 4.9 28.5 1.0 C A:SER180 4.9 39.3 1.0

Xenon binding site 3 out of 17 in the Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn.


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 3 of Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. within 5.0Å range: probe atom residue distance (Å) B Occ A:Xe505 b:63.7 occ:0.45 O C:HOH683 3.3 33.0 1.0 OE1 A:GLN214 3.5 63.0 1.0 CA A:GLN214 3.7 34.0 1.0 CG C:ARG372 3.7 30.8 1.0 C C:LYS371 3.8 26.7 1.0 N C:ARG372 3.8 26.5 1.0 CB C:LYS371 3.8 29.9 1.0 O C:LYS371 3.8 31.5 1.0 N A:GLN214 3.9 28.9 1.0 O A:PRO213 3.9 21.4 1.0 CA C:ARG372 3.9 32.2 1.0 C A:PRO213 4.1 25.1 1.0 CD C:ARG375 4.1 38.9 1.0 CD A:GLN214 4.2 58.8 1.0 CB A:ALA217 4.2 26.6 1.0 CB A:GLN214 4.3 35.5 1.0 CB C:ARG375 4.4 34.0 1.0 CB C:ARG372 4.4 31.8 1.0 CA C:LYS371 4.5 28.3 1.0 CG A:GLN214 4.7 41.5 1.0 O C:ASP368 4.7 36.9 1.0 NE C:ARG372 4.7 38.8 1.0 CB A:PRO213 4.8 26.4 1.0 C A:GLN214 4.8 28.9 1.0 CD C:ARG372 4.8 35.9 1.0 CG C:ARG375 4.8 37.0 1.0 O A:GLN214 4.9 27.7 1.0 NE C:ARG375 4.9 34.6 1.0

Xenon binding site 4 out of 17 in the Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn.


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 4 of Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. within 5.0Å range: probe atom residue distance (Å) B Occ A:Xe506 b:60.7 occ:0.35 OG A:SER84 3.6 34.9 1.0 O C:ILE323 4.1 44.7 1.0 N A:ARG85 4.1 36.7 1.0 CA A:ARG85 4.1 35.8 1.0 CG1 C:ILE323 4.3 51.2 1.0 N A:ALA86 4.3 48.6 1.0 C A:SER84 4.3 41.4 1.0 CB A:SER84 4.3 38.1 1.0 C A:ARG85 4.4 46.5 1.0 O A:SER84 4.5 44.4 1.0 CB C:TRP325 4.6 39.4 1.0 CB A:ALA86 4.6 36.4 1.0 C C:ILE323 4.6 47.0 1.0 N C:TRP325 4.8 40.2 1.0 CD1 C:ILE323 4.8 49.4 1.0 C C:SER324 4.8 43.8 1.0 CA C:SER324 4.8 45.0 1.0 CA A:SER84 5.0 38.9 1.0

Xenon binding site 5 out of 17 in the Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn.


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 5 of Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. within 5.0Å range: probe atom residue distance (Å) B Occ A:Xe507 b:57.6 occ:0.20 CB A:SER114 4.1 46.0 1.0 CB A:LEU299 4.1 39.0 1.0 OG A:SER114 4.6 48.2 1.0 N A:LEU299 4.7 37.5 1.0 CB A:LEU112 4.8 35.4 1.0 C A:PHE298 4.9 38.1 1.0 O A:LEU112 4.9 46.2 1.0 C A:GLY297 4.9 49.1 1.0 N A:PHE298 5.0 44.1 1.0 CD2 A:LEU299 5.0 38.7 1.0

Xenon binding site 6 out of 17 in the Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn.


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 6 of Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. within 5.0Å range: probe atom residue distance (Å) B Occ A:Xe508 b:65.1 occ:0.35 O A:HOH654 3.4 39.0 1.0 CA B:GLN214 3.6 31.2 1.0 CG A:ARG372 3.6 33.2 1.0 N B:GLN214 4.0 27.8 1.0 CD A:ARG375 4.0 44.1 1.0 N A:ARG372 4.0 32.0 1.0 O B:PRO213 4.1 30.5 1.0 CB B:GLN214 4.1 34.0 1.0 CA A:ARG372 4.1 34.2 1.0 CG B:GLN214 4.1 46.8 1.0 C A:LYS371 4.1 36.4 1.0 O A:LYS371 4.2 42.7 1.0 C B:PRO213 4.2 27.6 1.0 CB A:LYS371 4.2 41.9 1.0 CB B:ALA217 4.3 28.3 1.0 CB A:ARG375 4.4 34.7 1.0 CB A:ARG372 4.5 34.4 1.0 NE A:ARG372 4.6 39.8 1.0 OE1 B:GLN214 4.7 80.1 1.0 C B:GLN214 4.7 28.6 1.0 CD A:ARG372 4.7 39.2 1.0 NE A:ARG375 4.8 48.7 1.0 CG A:ARG375 4.8 37.7 1.0 O B:GLN214 4.8 25.1 1.0 CD B:GLN214 4.8 64.4 1.0 CA A:LYS371 4.9 37.1 1.0 O A:ASP368 4.9 34.1 1.0

Xenon binding site 7 out of 17 in the Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn.


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 7 of Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. within 5.0Å range: probe atom residue distance (Å) B Occ B:Xe501 b:73.5 occ:0.45 O B:ASP109 3.7 41.8 1.0 CB B:ALA86 4.0 40.9 1.0 CB B:LEU110 4.1 48.1 1.0 CG2 B:ILE309 4.3 65.7 1.0 O B:SER87 4.3 51.4 1.0 CA B:ALA86 4.3 40.2 1.0 N B:SER87 4.4 36.1 1.0 C B:ASP109 4.4 43.7 1.0 CG1 B:ILE309 4.5 61.0 1.0 C B:ALA86 4.6 46.8 1.0 XE B:XE502 4.6 60.2 0.3 CD2 B:TYR108 4.6 56.1 1.0 CD1 B:LEU110 4.7 54.0 1.0 CB B:TYR108 4.7 49.4 1.0 N B:ASP109 4.8 42.5 1.0 CA B:LEU110 4.8 43.6 1.0 N B:LEU110 4.8 41.9 1.0 CG B:LEU110 4.9 51.1 1.0 CB B:ILE309 4.9 60.1 1.0

Xenon binding site 8 out of 17 in the Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn.


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 8 of Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. within 5.0Å range: probe atom residue distance (Å) B Occ B:Xe502 b:60.2 occ:0.35 O B:ALA86 3.6 46.9 1.0 C B:ALA86 3.9 46.8 1.0 CA B:SER87 4.2 38.8 1.0 N B:SER87 4.2 36.1 1.0 O A:PRO321 4.3 44.4 1.0 CB B:ALA86 4.3 40.9 1.0 CG1 A:ILE323 4.4 49.9 1.0 CD1 A:ILE323 4.4 51.8 1.0 C B:SER87 4.5 43.4 1.0 CB A:PRO321 4.5 50.7 1.0 C A:PRO321 4.5 46.2 1.0 XE B:XE501 4.6 73.5 0.5 CG A:PRO321 4.6 58.8 1.0 N B:ALA88 4.7 43.3 1.0 N A:SER322 4.7 42.9 1.0 CA B:ALA86 4.8 40.2 1.0 N A:ILE323 4.8 41.7 1.0 CA A:SER322 4.9 48.2 1.0 O B:SER87 4.9 51.4 1.0 CB B:ALA88 5.0 43.1 1.0

Xenon binding site 9 out of 17 in the Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn.


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 9 of Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. within 5.0Å range: probe atom residue distance (Å) B Occ B:Xe503 b:67.3 occ:0.35 OG B:SER84 3.8 42.6 1.0 O A:ILE323 4.2 38.0 1.0 N B:ARG85 4.3 40.8 1.0 N B:ALA86 4.4 40.8 1.0 C B:ARG85 4.4 45.3 1.0 CB B:SER84 4.4 34.5 1.0 CB A:TRP325 4.5 37.2 1.0 CG2 A:ILE323 4.5 51.8 1.0 C B:SER84 4.5 42.6 1.0 CA B:ARG85 4.5 42.4 1.0 CB B:ALA86 4.6 40.9 1.0 O B:SER84 4.7 39.2 1.0 C A:ILE323 4.8 42.4 1.0 N A:TRP325 4.9 36.5 1.0 O B:ARG85 4.9 41.6 1.0 CB A:ILE323 4.9 45.4 1.0 C A:SER324 5.0 40.6 1.0

Xenon binding site 10 out of 17 in the Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn.


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 10 of Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. within 5.0Å range: probe atom residue distance (Å) B Occ B:Xe506 b:63.8 occ:0.30 OE1 B:GLU411 3.2 46.8 1.0 O B:GLN177 3.5 31.2 1.0 O B:ALA201 3.6 30.3 1.0 CA B:ALA201 3.7 37.0 1.0 CB B:ALA201 3.8 34.6 1.0 CB B:GLN177 3.8 32.9 1.0 CB B:SER180 3.9 41.9 1.0 CA B:GLN177 4.0 28.4 1.0 CG B:ARG204 4.0 46.1 1.0 CG B:GLN177 4.1 35.3 1.0 C B:ALA201 4.1 34.0 1.0 C B:GLN177 4.2 29.1 1.0 CB B:ARG204 4.2 39.8 1.0 CD B:GLU411 4.2 44.2 1.0 N B:ARG181 4.5 30.7 1.0 CZ B:PHE404 4.5 31.8 1.0 OE2 B:GLU411 4.6 45.5 1.0 N B:LEU205 4.6 30.1 1.0 OE1 B:GLN177 4.7 29.5 1.0 OG B:SER180 4.7 49.7 1.0 CD B:GLN177 4.8 30.3 1.0 CD1 B:LEU408 4.8 29.1 1.0 C B:SER180 4.9 27.3 1.0

Y.V.Ntsogo Enguene, G.Phan, C.Garnier, A.Ducruix, T.Prange, I.Broutin. Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. Plos One V. 12 84045 2017.
ISSN: ESSN 1932-6203
PubMed: 28886086
DOI: 10.1371/JOURNAL.PONE.0184045