Atomistry » Xenon, Xe » PDB 4zzc-6qii » 5nsw
Atomistry »
  Xenon, Xe »
    PDB 4zzc-6qii »
      5nsw »

Xenon in PDB 5nsw: Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn.

Protein crystallography data

The structure of Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn., PDB code: 5nsw was solved by G.Phan, T.Prange, Y.V.Enguene Ntsogo, C.Garnier, A.Ducruix, I.Broutin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.42 / 2.50
Space group I 4
Cell size a, b, c (Å), α, β, γ (°) 256.412, 256.412, 81.395, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 23.9

Other elements in 5nsw:

The structure of Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. also contains other interesting chemical elements:

Nickel (Ni) 1 atom
Sodium (Na) 1 atom

Xenon Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 17;

Binding sites:

The binding sites of Xenon atom in the Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. (pdb code 5nsw). This binding sites where shown within 5.0 Angstroms radius around Xenon atom.
In total 17 binding sites of Xenon where determined in the Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn., PDB code: 5nsw:
Jump to Xenon binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Xenon binding site 1 out of 17 in 5nsw

Go back to Xenon Binding Sites List in 5nsw
Xenon binding site 1 out of 17 in the Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn.


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 1 of Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe503

b:55.4
occ:1.00
OD1 A:ASP409 3.6 28.1 1.0
OD1 C:ASP409 3.7 24.3 1.0
NH1 A:ARG412 3.8 41.5 1.0
OD1 B:ASP409 3.8 25.0 1.0
CD1 C:LEU405 3.9 31.3 1.0
CD1 A:LEU405 3.9 32.3 1.0
CD2 B:LEU405 4.0 35.2 1.0
CD2 C:LEU405 4.0 29.3 1.0
CD1 B:LEU405 4.0 28.1 1.0
CD2 A:LEU405 4.0 36.6 1.0
CG C:LEU405 4.1 31.2 1.0
CG A:LEU405 4.1 32.5 1.0
NH1 B:ARG412 4.1 37.4 1.0
NH1 C:ARG412 4.1 33.8 1.0
CG A:ASP409 4.1 31.3 1.0
CG B:LEU405 4.1 30.0 1.0
CG C:ASP409 4.1 32.0 1.0
CB A:ASP409 4.2 32.7 1.0
CG B:ASP409 4.3 31.6 1.0
CB C:ASP409 4.3 30.7 1.0
CB B:ASP409 4.4 31.8 1.0
CZ A:ARG412 4.9 39.3 1.0
OD2 C:ASP409 4.9 32.7 1.0
OD2 A:ASP409 5.0 32.0 1.0

Xenon binding site 2 out of 17 in 5nsw

Go back to Xenon Binding Sites List in 5nsw
Xenon binding site 2 out of 17 in the Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn.


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 2 of Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe504

b:67.2
occ:0.30
OE1 A:GLU411 3.1 46.1 1.0
O A:GLN177 3.7 37.2 1.0
O A:ALA201 3.8 33.5 1.0
CA A:ALA201 3.8 33.7 1.0
CB A:ALA201 3.9 29.2 1.0
CB A:SER180 3.9 44.5 1.0
CB A:GLN177 3.9 30.5 1.0
CG A:GLN177 4.0 32.9 1.0
CA A:GLN177 4.0 33.8 1.0
CG A:ARG204 4.1 50.6 1.0
CZ A:PHE404 4.2 32.6 1.0
CD A:GLU411 4.3 47.6 1.0
C A:GLN177 4.3 37.0 1.0
C A:ALA201 4.3 34.4 1.0
CB A:ARG204 4.4 37.8 1.0
N A:ARG181 4.5 37.4 1.0
OG A:SER180 4.7 49.5 1.0
CD1 A:LEU408 4.8 41.8 1.0
CD A:GLN177 4.8 36.6 1.0
OE2 A:GLU411 4.8 42.2 1.0
OE1 A:GLN177 4.9 45.6 1.0
CE1 A:PHE404 4.9 30.4 1.0
N A:LEU205 4.9 28.5 1.0
C A:SER180 4.9 39.3 1.0

Xenon binding site 3 out of 17 in 5nsw

Go back to Xenon Binding Sites List in 5nsw
Xenon binding site 3 out of 17 in the Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn.


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 3 of Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe505

b:63.7
occ:0.45
O C:HOH683 3.3 33.0 1.0
OE1 A:GLN214 3.5 63.0 1.0
CA A:GLN214 3.7 34.0 1.0
CG C:ARG372 3.7 30.8 1.0
C C:LYS371 3.8 26.7 1.0
N C:ARG372 3.8 26.5 1.0
CB C:LYS371 3.8 29.9 1.0
O C:LYS371 3.8 31.5 1.0
N A:GLN214 3.9 28.9 1.0
O A:PRO213 3.9 21.4 1.0
CA C:ARG372 3.9 32.2 1.0
C A:PRO213 4.1 25.1 1.0
CD C:ARG375 4.1 38.9 1.0
CD A:GLN214 4.2 58.8 1.0
CB A:ALA217 4.2 26.6 1.0
CB A:GLN214 4.3 35.5 1.0
CB C:ARG375 4.4 34.0 1.0
CB C:ARG372 4.4 31.8 1.0
CA C:LYS371 4.5 28.3 1.0
CG A:GLN214 4.7 41.5 1.0
O C:ASP368 4.7 36.9 1.0
NE C:ARG372 4.7 38.8 1.0
CB A:PRO213 4.8 26.4 1.0
C A:GLN214 4.8 28.9 1.0
CD C:ARG372 4.8 35.9 1.0
CG C:ARG375 4.8 37.0 1.0
O A:GLN214 4.9 27.7 1.0
NE C:ARG375 4.9 34.6 1.0

Xenon binding site 4 out of 17 in 5nsw

Go back to Xenon Binding Sites List in 5nsw
Xenon binding site 4 out of 17 in the Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn.


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 4 of Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe506

b:60.7
occ:0.35
OG A:SER84 3.6 34.9 1.0
O C:ILE323 4.1 44.7 1.0
N A:ARG85 4.1 36.7 1.0
CA A:ARG85 4.1 35.8 1.0
CG1 C:ILE323 4.3 51.2 1.0
N A:ALA86 4.3 48.6 1.0
C A:SER84 4.3 41.4 1.0
CB A:SER84 4.3 38.1 1.0
C A:ARG85 4.4 46.5 1.0
O A:SER84 4.5 44.4 1.0
CB C:TRP325 4.6 39.4 1.0
CB A:ALA86 4.6 36.4 1.0
C C:ILE323 4.6 47.0 1.0
N C:TRP325 4.8 40.2 1.0
CD1 C:ILE323 4.8 49.4 1.0
C C:SER324 4.8 43.8 1.0
CA C:SER324 4.8 45.0 1.0
CA A:SER84 5.0 38.9 1.0

Xenon binding site 5 out of 17 in 5nsw

Go back to Xenon Binding Sites List in 5nsw
Xenon binding site 5 out of 17 in the Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn.


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 5 of Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe507

b:57.6
occ:0.20
CB A:SER114 4.1 46.0 1.0
CB A:LEU299 4.1 39.0 1.0
OG A:SER114 4.6 48.2 1.0
N A:LEU299 4.7 37.5 1.0
CB A:LEU112 4.8 35.4 1.0
C A:PHE298 4.9 38.1 1.0
O A:LEU112 4.9 46.2 1.0
C A:GLY297 4.9 49.1 1.0
N A:PHE298 5.0 44.1 1.0
CD2 A:LEU299 5.0 38.7 1.0

Xenon binding site 6 out of 17 in 5nsw

Go back to Xenon Binding Sites List in 5nsw
Xenon binding site 6 out of 17 in the Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn.


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 6 of Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe508

b:65.1
occ:0.35
O A:HOH654 3.4 39.0 1.0
CA B:GLN214 3.6 31.2 1.0
CG A:ARG372 3.6 33.2 1.0
N B:GLN214 4.0 27.8 1.0
CD A:ARG375 4.0 44.1 1.0
N A:ARG372 4.0 32.0 1.0
O B:PRO213 4.1 30.5 1.0
CB B:GLN214 4.1 34.0 1.0
CA A:ARG372 4.1 34.2 1.0
CG B:GLN214 4.1 46.8 1.0
C A:LYS371 4.1 36.4 1.0
O A:LYS371 4.2 42.7 1.0
C B:PRO213 4.2 27.6 1.0
CB A:LYS371 4.2 41.9 1.0
CB B:ALA217 4.3 28.3 1.0
CB A:ARG375 4.4 34.7 1.0
CB A:ARG372 4.5 34.4 1.0
NE A:ARG372 4.6 39.8 1.0
OE1 B:GLN214 4.7 80.1 1.0
C B:GLN214 4.7 28.6 1.0
CD A:ARG372 4.7 39.2 1.0
NE A:ARG375 4.8 48.7 1.0
CG A:ARG375 4.8 37.7 1.0
O B:GLN214 4.8 25.1 1.0
CD B:GLN214 4.8 64.4 1.0
CA A:LYS371 4.9 37.1 1.0
O A:ASP368 4.9 34.1 1.0

Xenon binding site 7 out of 17 in 5nsw

Go back to Xenon Binding Sites List in 5nsw
Xenon binding site 7 out of 17 in the Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn.


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 7 of Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Xe501

b:73.5
occ:0.45
O B:ASP109 3.7 41.8 1.0
CB B:ALA86 4.0 40.9 1.0
CB B:LEU110 4.1 48.1 1.0
CG2 B:ILE309 4.3 65.7 1.0
O B:SER87 4.3 51.4 1.0
CA B:ALA86 4.3 40.2 1.0
N B:SER87 4.4 36.1 1.0
C B:ASP109 4.4 43.7 1.0
CG1 B:ILE309 4.5 61.0 1.0
C B:ALA86 4.6 46.8 1.0
XE B:XE502 4.6 60.2 0.3
CD2 B:TYR108 4.6 56.1 1.0
CD1 B:LEU110 4.7 54.0 1.0
CB B:TYR108 4.7 49.4 1.0
N B:ASP109 4.8 42.5 1.0
CA B:LEU110 4.8 43.6 1.0
N B:LEU110 4.8 41.9 1.0
CG B:LEU110 4.9 51.1 1.0
CB B:ILE309 4.9 60.1 1.0

Xenon binding site 8 out of 17 in 5nsw

Go back to Xenon Binding Sites List in 5nsw
Xenon binding site 8 out of 17 in the Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn.


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 8 of Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Xe502

b:60.2
occ:0.35
O B:ALA86 3.6 46.9 1.0
C B:ALA86 3.9 46.8 1.0
CA B:SER87 4.2 38.8 1.0
N B:SER87 4.2 36.1 1.0
O A:PRO321 4.3 44.4 1.0
CB B:ALA86 4.3 40.9 1.0
CG1 A:ILE323 4.4 49.9 1.0
CD1 A:ILE323 4.4 51.8 1.0
C B:SER87 4.5 43.4 1.0
CB A:PRO321 4.5 50.7 1.0
C A:PRO321 4.5 46.2 1.0
XE B:XE501 4.6 73.5 0.5
CG A:PRO321 4.6 58.8 1.0
N B:ALA88 4.7 43.3 1.0
N A:SER322 4.7 42.9 1.0
CA B:ALA86 4.8 40.2 1.0
N A:ILE323 4.8 41.7 1.0
CA A:SER322 4.9 48.2 1.0
O B:SER87 4.9 51.4 1.0
CB B:ALA88 5.0 43.1 1.0

Xenon binding site 9 out of 17 in 5nsw

Go back to Xenon Binding Sites List in 5nsw
Xenon binding site 9 out of 17 in the Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn.


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 9 of Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Xe503

b:67.3
occ:0.35
OG B:SER84 3.8 42.6 1.0
O A:ILE323 4.2 38.0 1.0
N B:ARG85 4.3 40.8 1.0
N B:ALA86 4.4 40.8 1.0
C B:ARG85 4.4 45.3 1.0
CB B:SER84 4.4 34.5 1.0
CB A:TRP325 4.5 37.2 1.0
CG2 A:ILE323 4.5 51.8 1.0
C B:SER84 4.5 42.6 1.0
CA B:ARG85 4.5 42.4 1.0
CB B:ALA86 4.6 40.9 1.0
O B:SER84 4.7 39.2 1.0
C A:ILE323 4.8 42.4 1.0
N A:TRP325 4.9 36.5 1.0
O B:ARG85 4.9 41.6 1.0
CB A:ILE323 4.9 45.4 1.0
C A:SER324 5.0 40.6 1.0

Xenon binding site 10 out of 17 in 5nsw

Go back to Xenon Binding Sites List in 5nsw
Xenon binding site 10 out of 17 in the Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn.


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 10 of Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Xe506

b:63.8
occ:0.30
OE1 B:GLU411 3.2 46.8 1.0
O B:GLN177 3.5 31.2 1.0
O B:ALA201 3.6 30.3 1.0
CA B:ALA201 3.7 37.0 1.0
CB B:ALA201 3.8 34.6 1.0
CB B:GLN177 3.8 32.9 1.0
CB B:SER180 3.9 41.9 1.0
CA B:GLN177 4.0 28.4 1.0
CG B:ARG204 4.0 46.1 1.0
CG B:GLN177 4.1 35.3 1.0
C B:ALA201 4.1 34.0 1.0
C B:GLN177 4.2 29.1 1.0
CB B:ARG204 4.2 39.8 1.0
CD B:GLU411 4.2 44.2 1.0
N B:ARG181 4.5 30.7 1.0
CZ B:PHE404 4.5 31.8 1.0
OE2 B:GLU411 4.6 45.5 1.0
N B:LEU205 4.6 30.1 1.0
OE1 B:GLN177 4.7 29.5 1.0
OG B:SER180 4.7 49.7 1.0
CD B:GLN177 4.8 30.3 1.0
CD1 B:LEU408 4.8 29.1 1.0
C B:SER180 4.9 27.3 1.0

Reference:

Y.V.Ntsogo Enguene, G.Phan, C.Garnier, A.Ducruix, T.Prange, I.Broutin. Xenon For Tunnelling Analysis of the Efflux Pump Component Oprn. Plos One V. 12 84045 2017.
ISSN: ESSN 1932-6203
PubMed: 28886086
DOI: 10.1371/JOURNAL.PONE.0184045
Page generated: Sun Nov 1 12:23:59 2020

Last articles

Xe in 6AYK
Xe in 6QII
Xe in 6ASM
Xe in 5NSW
Xe in 6FY9
Xe in 5O1K
Xe in 5O27
Xe in 5M69
Xe in 5KPU
Xe in 5I63
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy