Xenon in PDB 4pwb: Engineered Oxidase Reveals Steric Control of Oxygen Reduction
Protein crystallography data
The structure of Engineered Oxidase Reveals Steric Control of Oxygen Reduction, PDB code: 4pwb
was solved by
D.Zafred,
W.Keller,
P.Macheroux,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
49.41 /
1.90
|
Space group
|
P 61 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
117.640,
117.640,
202.960,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
16 /
18.7
|
Other elements in 4pwb:
The structure of Engineered Oxidase Reveals Steric Control of Oxygen Reduction also contains other interesting chemical elements:
Xenon Binding Sites:
The binding sites of Xenon atom in the Engineered Oxidase Reveals Steric Control of Oxygen Reduction
(pdb code 4pwb). This binding sites where shown within
5.0 Angstroms radius around Xenon atom.
In total 2 binding sites of Xenon where determined in the
Engineered Oxidase Reveals Steric Control of Oxygen Reduction, PDB code: 4pwb:
Jump to Xenon binding site number:
1;
2;
Xenon binding site 1 out
of 2 in 4pwb
Go back to
Xenon Binding Sites List in 4pwb
Xenon binding site 1 out
of 2 in the Engineered Oxidase Reveals Steric Control of Oxygen Reduction
Mono view
Stereo pair view
|
A full contact list of Xenon with other atoms in the Xe binding
site number 1 of Engineered Oxidase Reveals Steric Control of Oxygen Reduction within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Xe606
b:48.4
occ:0.36
|
HH12
|
A:ARG440
|
3.1
|
21.8
|
1.0
|
HA3
|
A:GLY208
|
3.2
|
15.6
|
1.0
|
O
|
A:HOH996
|
3.3
|
18.6
|
1.0
|
O
|
A:GLN491
|
3.3
|
19.0
|
1.0
|
O
|
A:HOH986
|
3.4
|
15.1
|
1.0
|
HZ
|
A:PHE467
|
3.5
|
13.6
|
1.0
|
HZ3
|
A:TRP462
|
3.5
|
16.0
|
1.0
|
HE2
|
A:PHE467
|
3.5
|
14.6
|
1.0
|
HD2
|
A:TYR466
|
3.6
|
14.3
|
1.0
|
NH1
|
A:ARG440
|
3.8
|
18.2
|
1.0
|
HE2
|
A:TYR466
|
3.8
|
16.7
|
1.0
|
HB1
|
A:ALA437
|
3.8
|
13.7
|
1.0
|
CZ3
|
A:TRP462
|
4.1
|
13.3
|
1.0
|
HH11
|
A:ARG440
|
4.1
|
21.8
|
1.0
|
HH22
|
A:ARG440
|
4.1
|
23.8
|
1.0
|
CA
|
A:GLY208
|
4.1
|
13.0
|
1.0
|
CD2
|
A:TYR466
|
4.1
|
11.9
|
1.0
|
CZ
|
A:PHE467
|
4.1
|
11.3
|
1.0
|
HA
|
A:SER492
|
4.1
|
16.2
|
1.0
|
CE2
|
A:PHE467
|
4.2
|
12.2
|
1.0
|
CE2
|
A:TYR466
|
4.2
|
13.9
|
1.0
|
HH2
|
A:TRP462
|
4.2
|
12.6
|
1.0
|
HA2
|
A:GLY208
|
4.2
|
15.6
|
1.0
|
O
|
A:HOH708
|
4.4
|
24.4
|
1.0
|
CH2
|
A:TRP462
|
4.5
|
10.5
|
1.0
|
C
|
A:GLN491
|
4.5
|
15.3
|
1.0
|
HB3
|
A:GLN491
|
4.6
|
21.9
|
1.0
|
CZ
|
A:ARG440
|
4.6
|
20.2
|
1.0
|
O
|
A:GLY207
|
4.6
|
12.9
|
1.0
|
H
|
A:GLY209
|
4.6
|
18.8
|
1.0
|
NH2
|
A:ARG440
|
4.6
|
19.8
|
1.0
|
CB
|
A:ALA437
|
4.7
|
11.4
|
1.0
|
HB2
|
A:ALA437
|
4.7
|
13.7
|
1.0
|
HD11
|
A:ILE493
|
4.7
|
18.7
|
1.0
|
C
|
A:GLY208
|
4.8
|
14.3
|
1.0
|
HG2
|
A:GLN491
|
4.9
|
21.0
|
1.0
|
N
|
A:GLY209
|
4.9
|
15.7
|
1.0
|
HD13
|
A:ILE493
|
4.9
|
18.7
|
1.0
|
HG
|
A:SER211
|
4.9
|
21.4
|
1.0
|
HG12
|
A:ILE493
|
5.0
|
15.8
|
1.0
|
CE3
|
A:TRP462
|
5.0
|
12.4
|
1.0
|
|
Xenon binding site 2 out
of 2 in 4pwb
Go back to
Xenon Binding Sites List in 4pwb
Xenon binding site 2 out
of 2 in the Engineered Oxidase Reveals Steric Control of Oxygen Reduction
Mono view
Stereo pair view
|
A full contact list of Xenon with other atoms in the Xe binding
site number 2 of Engineered Oxidase Reveals Steric Control of Oxygen Reduction within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Xe607
b:26.4
occ:0.42
|
H
|
A:ALA186
|
2.9
|
18.3
|
1.0
|
HB2
|
A:ASP185
|
3.1
|
20.8
|
1.0
|
HG23
|
A:VAL481
|
3.2
|
18.7
|
1.0
|
HA
|
A:ASP185
|
3.3
|
16.8
|
1.0
|
HB2
|
A:ASP482
|
3.3
|
16.8
|
1.0
|
HB
|
A:VAL481
|
3.4
|
21.0
|
1.0
|
O
|
A:PHE212
|
3.5
|
16.8
|
1.0
|
HB3
|
A:ALA186
|
3.5
|
22.0
|
1.0
|
HD2
|
A:PHE487
|
3.5
|
18.9
|
1.0
|
N
|
A:ALA186
|
3.6
|
15.2
|
1.0
|
C
|
A:PHE212
|
3.6
|
15.6
|
1.0
|
HA3
|
A:GLY213
|
3.7
|
16.4
|
1.0
|
HG21
|
A:VAL481
|
3.7
|
18.7
|
1.0
|
O
|
A:VAL481
|
3.7
|
19.0
|
1.0
|
N
|
A:GLY213
|
3.8
|
12.8
|
1.0
|
HA
|
A:PHE212
|
3.8
|
15.6
|
1.0
|
HA2
|
A:GLY213
|
3.8
|
16.4
|
1.0
|
CG2
|
A:VAL481
|
3.8
|
15.6
|
1.0
|
HE1
|
A:HIS200
|
3.9
|
18.7
|
1.0
|
CB
|
A:ASP185
|
3.9
|
17.4
|
1.0
|
CA
|
A:ASP185
|
3.9
|
14.0
|
1.0
|
CA
|
A:GLY213
|
4.0
|
13.7
|
1.0
|
CB
|
A:VAL481
|
4.0
|
17.5
|
1.0
|
HB1
|
A:ALA186
|
4.1
|
22.0
|
1.0
|
HE2
|
A:PHE487
|
4.1
|
18.2
|
1.0
|
CB
|
A:ALA186
|
4.2
|
18.3
|
1.0
|
C
|
A:ASP185
|
4.2
|
15.5
|
1.0
|
H
|
A:GLY213
|
4.2
|
15.4
|
1.0
|
CA
|
A:PHE212
|
4.3
|
13.0
|
1.0
|
HB3
|
A:ASP185
|
4.3
|
20.8
|
1.0
|
C
|
A:VAL481
|
4.3
|
16.8
|
1.0
|
CB
|
A:ASP482
|
4.3
|
14.0
|
1.0
|
CE1
|
A:HIS200
|
4.3
|
15.6
|
1.0
|
CD2
|
A:PHE487
|
4.3
|
15.7
|
1.0
|
NE2
|
A:HIS200
|
4.3
|
16.2
|
1.0
|
HD21
|
A:LEU183
|
4.4
|
21.6
|
1.0
|
CA
|
A:ALA186
|
4.4
|
16.9
|
1.0
|
CE2
|
A:PHE487
|
4.6
|
15.1
|
1.0
|
O
|
A:SER211
|
4.7
|
14.5
|
1.0
|
HG22
|
A:VAL481
|
4.7
|
18.7
|
1.0
|
HB3
|
A:ASP482
|
4.7
|
16.8
|
1.0
|
HA
|
A:ALA186
|
4.8
|
20.2
|
1.0
|
CA
|
A:VAL481
|
4.8
|
16.7
|
1.0
|
OD2
|
A:ASP482
|
4.8
|
15.1
|
1.0
|
CG
|
A:ASP482
|
4.9
|
19.6
|
1.0
|
O
|
A:HOH910
|
5.0
|
35.9
|
1.0
|
|
Reference:
D.Zafred,
W.Keller,
P.Macheroux.
Engineered Oxidase Reveals Steric Control of Oxygen Reduction To Be Published.
Page generated: Sat Oct 12 19:18:02 2024
|