Atomistry » Xenon, Xe » PDB 3pk5-4zzb » 3plm
Atomistry »
  Xenon, Xe »
    PDB 3pk5-4zzb »
      3plm »

Xenon in PDB 3plm: Urate Oxidase Under 2.0 Mpa / 20 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide

Enzymatic activity of Urate Oxidase Under 2.0 Mpa / 20 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide

All present enzymatic activity of Urate Oxidase Under 2.0 Mpa / 20 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide:
1.7.3.3;

Protein crystallography data

The structure of Urate Oxidase Under 2.0 Mpa / 20 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide, PDB code: 3plm was solved by G.Marassio, N.Colloc'h, T.Prange, J.H.Abraini, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.99 / 1.62
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 80.377, 96.257, 105.550, 90.00, 90.00, 90.00
R / Rfree (%) 17.3 / 19.4

Other elements in 3plm:

The structure of Urate Oxidase Under 2.0 Mpa / 20 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide also contains other interesting chemical elements:

Sodium (Na) 1 atom

Xenon Binding Sites:

The binding sites of Xenon atom in the Urate Oxidase Under 2.0 Mpa / 20 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide (pdb code 3plm). This binding sites where shown within 5.0 Angstroms radius around Xenon atom.
In total 2 binding sites of Xenon where determined in the Urate Oxidase Under 2.0 Mpa / 20 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide, PDB code: 3plm:
Jump to Xenon binding site number: 1; 2;

Xenon binding site 1 out of 2 in 3plm

Go back to Xenon Binding Sites List in 3plm
Xenon binding site 1 out of 2 in the Urate Oxidase Under 2.0 Mpa / 20 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 1 of Urate Oxidase Under 2.0 Mpa / 20 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe801

b:29.2
occ:0.60
N2 A:N2O803 0.6 37.2 0.2
O3 A:N2O803 1.3 33.5 0.2
N1 A:N2O803 1.4 34.5 0.2
CG2 A:THR230 3.8 17.6 1.0
CB A:THR230 3.9 17.4 1.0
CD1 A:LEU252 4.0 21.4 1.0
CD1 A:PHE219 4.1 20.3 1.0
CD2 A:LEU178 4.1 19.3 1.0
CG1 A:VAL227 4.2 16.5 1.0
O A:VAL227 4.3 15.8 1.0
CA A:VAL227 4.3 15.4 1.0
CE1 A:PHE219 4.4 19.2 1.0
CE A:MET234 4.5 21.2 1.0
CG2 A:VAL227 4.6 15.2 1.0
CB A:VAL227 4.6 14.9 1.0
N A:MET231 4.8 16.5 1.0
CG A:LEU178 4.8 16.3 1.0
OG1 A:THR230 4.8 17.0 1.0
C A:VAL227 4.8 14.4 1.0
CG2 A:THR180 4.9 16.0 1.0

Xenon binding site 2 out of 2 in 3plm

Go back to Xenon Binding Sites List in 3plm
Xenon binding site 2 out of 2 in the Urate Oxidase Under 2.0 Mpa / 20 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 2 of Urate Oxidase Under 2.0 Mpa / 20 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe802

b:29.1
occ:0.13
CE A:MET32 2.2 21.4 0.5
SD A:MET32 3.5 21.5 0.5
CG A:MET32 3.5 15.9 0.5
O A:VAL15 3.6 13.8 1.0
CE A:MET32 3.6 24.3 0.5
O A:TYR30 3.7 16.7 1.0
CG1 A:VAL15 3.7 18.0 1.0
CG A:MET32 3.8 17.6 0.5
SD A:MET32 3.8 23.7 0.5
N A:LYS17 3.9 13.9 1.0
C A:VAL15 4.0 13.1 1.0
CG2 A:VAL73 4.0 19.4 1.0
CB A:LYS17 4.0 14.5 1.0
CB A:TYR30 4.1 16.7 1.0
CB A:VAL15 4.1 14.6 1.0
C A:TYR30 4.1 15.6 1.0
CG1 A:VAL73 4.1 19.6 1.0
CB A:VAL73 4.1 18.8 1.0
C A:TYR16 4.2 12.7 1.0
CA A:TYR16 4.3 13.4 1.0
N A:MET32 4.3 12.5 1.0
N A:TYR16 4.4 12.8 1.0
CB A:MET32 4.4 15.5 1.0
CA A:GLU31 4.5 13.4 1.0
N A:GLU31 4.5 14.4 1.0
CA A:LYS17 4.6 15.0 1.0
C A:GLU31 4.6 13.2 1.0
CA A:VAL15 4.7 13.8 1.0
CA A:TYR30 4.8 15.9 1.0
O A:TYR16 4.8 13.5 1.0
CA A:MET32 5.0 14.1 1.0

Reference:

G.Marassio, T.Prange, H.N.David, J.Sopkova-De Oliveira Santos, L.Gabison, N.Delcroix, J.H.Abraini, N.Colloc'h. Pressure-Response Analysis of Anesthetic Gases Xenon and Nitrous Oxide on Urate Oxidase: A Crystallographic Study. Faseb J. V. 25 2266 2011.
ISSN: ISSN 0892-6638
PubMed: 21421845
DOI: 10.1096/FJ.11-183046
Page generated: Wed Dec 16 02:39:59 2020

Last articles

Zn in 7NA9
Zn in 7LZP
Zn in 7M1H
Zn in 7L6V
Zn in 7CM0
V in 7P8R
Ni in 7L19
Na in 7T88
Na in 7MJ5
Na in 7L00
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy