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Xenon in PDB 3pli: Urate Oxidase Under 1.8 Mpa / 18 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide

Enzymatic activity of Urate Oxidase Under 1.8 Mpa / 18 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide

All present enzymatic activity of Urate Oxidase Under 1.8 Mpa / 18 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide:
1.7.3.3;

Protein crystallography data

The structure of Urate Oxidase Under 1.8 Mpa / 18 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide, PDB code: 3pli was solved by G.Marassio, N.Colloc'h, T.Prange, J.H.Abraini, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.89 / 1.68
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 80.294, 96.270, 105.513, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 18.3

Other elements in 3pli:

The structure of Urate Oxidase Under 1.8 Mpa / 18 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide also contains other interesting chemical elements:

Sodium (Na) 1 atom

Xenon Binding Sites:

The binding sites of Xenon atom in the Urate Oxidase Under 1.8 Mpa / 18 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide (pdb code 3pli). This binding sites where shown within 5.0 Angstroms radius around Xenon atom.
In total 2 binding sites of Xenon where determined in the Urate Oxidase Under 1.8 Mpa / 18 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide, PDB code: 3pli:
Jump to Xenon binding site number: 1; 2;

Xenon binding site 1 out of 2 in 3pli

Go back to Xenon Binding Sites List in 3pli
Xenon binding site 1 out of 2 in the Urate Oxidase Under 1.8 Mpa / 18 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 1 of Urate Oxidase Under 1.8 Mpa / 18 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe801

b:27.1
occ:0.50
N2 A:N2O803 0.6 12.0 0.2
N1 A:N2O803 1.2 9.4 0.2
O3 A:N2O803 1.5 9.3 0.2
CD1 A:LEU252 3.9 19.0 1.0
CG2 A:THR230 3.9 16.3 1.0
CD1 A:PHE219 4.0 18.4 1.0
CB A:THR230 4.0 15.9 1.0
CD2 A:LEU178 4.1 18.8 1.0
CG1 A:VAL227 4.2 14.8 1.0
CE1 A:PHE219 4.3 16.1 1.0
O A:VAL227 4.4 14.2 1.0
CA A:VAL227 4.4 13.5 1.0
CE A:MET234 4.5 18.6 1.0
CG2 A:VAL227 4.7 13.2 1.0
CB A:VAL227 4.7 13.0 1.0
CG2 A:THR180 4.8 14.8 1.0
N A:MET231 4.8 15.3 1.0
CG A:LEU178 4.8 15.0 1.0
OG1 A:THR230 4.9 15.5 1.0
C A:VAL227 4.9 12.6 1.0

Xenon binding site 2 out of 2 in 3pli

Go back to Xenon Binding Sites List in 3pli
Xenon binding site 2 out of 2 in the Urate Oxidase Under 1.8 Mpa / 18 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 2 of Urate Oxidase Under 1.8 Mpa / 18 Bars Pressure of Equimolar Mixture Xenon : Nitrous Oxide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe802

b:31.4
occ:0.09
CE A:MET32 2.2 21.2 0.5
SD A:MET32 3.4 20.7 0.5
CG A:MET32 3.4 15.3 0.5
O A:VAL15 3.5 12.2 1.0
O A:TYR30 3.6 14.9 1.0
SD A:MET32 3.7 20.8 0.5
CG A:MET32 3.7 14.7 0.5
CE A:MET32 3.8 20.9 0.5
CG1 A:VAL15 3.8 15.2 1.0
C A:VAL15 3.9 11.9 1.0
N A:LYS17 3.9 12.0 1.0
CB A:VAL15 4.0 13.2 1.0
C A:TYR30 4.0 13.6 1.0
CB A:TYR30 4.0 14.6 1.0
CB A:LYS17 4.1 12.9 1.0
CG2 A:VAL73 4.1 18.7 1.0
N A:MET32 4.2 11.4 1.0
CG1 A:VAL73 4.2 19.0 1.0
C A:TYR16 4.2 11.4 1.0
CB A:MET32 4.2 13.9 1.0
CB A:VAL73 4.2 17.9 1.0
CA A:TYR16 4.3 11.6 1.0
N A:TYR16 4.3 11.4 1.0
CA A:GLU31 4.4 11.7 1.0
N A:GLU31 4.4 12.3 1.0
C A:GLU31 4.5 11.9 1.0
CA A:VAL15 4.7 12.6 1.0
CA A:LYS17 4.7 13.2 1.0
CA A:TYR30 4.7 14.0 1.0
O A:TYR16 4.8 12.0 1.0
CA A:MET32 4.8 12.4 1.0

Reference:

G.Marassio, T.Prange, H.N.David, J.Sopkova-De Oliveira Santos, L.Gabison, N.Delcroix, J.H.Abraini, N.Colloc'h. Pressure-Response Analysis of Anesthetic Gases Xenon and Nitrous Oxide on Urate Oxidase: A Crystallographic Study. Faseb J. V. 25 2266 2011.
ISSN: ISSN 0892-6638
PubMed: 21421845
DOI: 10.1096/FJ.11-183046
Page generated: Wed Dec 16 02:39:58 2020

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