Atomistry » Xenon, Xe » PDB 3pk5-4zzb » 3pkk
Atomistry »
  Xenon, Xe »
    PDB 3pk5-4zzb »
      3pkk »

Xenon in PDB 3pkk: Urate Oxidase Under 0.5 Mpa / 5 Bars Pressure of Xenon

Enzymatic activity of Urate Oxidase Under 0.5 Mpa / 5 Bars Pressure of Xenon

All present enzymatic activity of Urate Oxidase Under 0.5 Mpa / 5 Bars Pressure of Xenon:
1.7.3.3;

Protein crystallography data

The structure of Urate Oxidase Under 0.5 Mpa / 5 Bars Pressure of Xenon, PDB code: 3pkk was solved by G.Marassio, N.Colloc'h, T.Prange, J.H.Abraini, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.99 / 1.73
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 80.315, 96.262, 105.510, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 18.2

Other elements in 3pkk:

The structure of Urate Oxidase Under 0.5 Mpa / 5 Bars Pressure of Xenon also contains other interesting chemical elements:

Sodium (Na) 1 atom

Xenon Binding Sites:

The binding sites of Xenon atom in the Urate Oxidase Under 0.5 Mpa / 5 Bars Pressure of Xenon (pdb code 3pkk). This binding sites where shown within 5.0 Angstroms radius around Xenon atom.
In total only one binding site of Xenon was determined in the Urate Oxidase Under 0.5 Mpa / 5 Bars Pressure of Xenon, PDB code: 3pkk:

Xenon binding site 1 out of 1 in 3pkk

Go back to Xenon Binding Sites List in 3pkk
Xenon binding site 1 out of 1 in the Urate Oxidase Under 0.5 Mpa / 5 Bars Pressure of Xenon


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 1 of Urate Oxidase Under 0.5 Mpa / 5 Bars Pressure of Xenon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe801

b:32.0
occ:0.18
CG2 A:THR230 3.8 15.7 1.0
CD1 A:LEU252 3.8 18.5 1.0
CD1 A:PHE219 3.9 16.8 1.0
CB A:THR230 4.1 15.9 1.0
CD2 A:LEU178 4.1 17.2 1.0
CE1 A:PHE219 4.2 15.2 1.0
CG1 A:VAL227 4.3 14.1 1.0
CE A:MET234 4.4 19.5 1.0
O A:VAL227 4.5 12.8 1.0
CA A:VAL227 4.5 13.2 1.0
CG2 A:THR180 4.6 13.5 1.0
CG2 A:VAL227 4.8 13.3 1.0
CB A:VAL227 4.8 12.9 1.0
CG A:LEU178 4.8 14.6 1.0
N A:MET231 4.9 14.8 1.0
OG1 A:THR230 4.9 14.5 1.0
C A:VAL227 5.0 12.5 1.0

Reference:

G.Marassio, T.Prange, H.N.David, J.Sopkova-De Oliveira Santos, L.Gabison, N.Delcroix, J.H.Abraini, N.Colloc'h. Pressure-Response Analysis of Anesthetic Gases Xenon and Nitrous Oxide on Urate Oxidase: A Crystallographic Study. Faseb J. V. 25 2266 2011.
ISSN: ISSN 0892-6638
PubMed: 21421845
DOI: 10.1096/FJ.11-183046
Page generated: Wed Dec 16 02:39:56 2020

Last articles

Zn in 7M6U
Zn in 7NNG
Zn in 7NEE
Zn in 7NEU
Zn in 7M3K
Zn in 7KWD
Zn in 7KYH
Zn in 7KNG
Zn in 7KY2
Zn in 7KYF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy