Atomistry » Xenon, Xe » PDB 1w53-3pk4 » 3fz6
Atomistry »
  Xenon, Xe »
    PDB 1w53-3pk4 »
      3fz6 »

Xenon in PDB 3fz6: Crystal Structure of Glutamate Decarboxylase Beta From Escherichia Coli: Complex with Xenon

Enzymatic activity of Crystal Structure of Glutamate Decarboxylase Beta From Escherichia Coli: Complex with Xenon

All present enzymatic activity of Crystal Structure of Glutamate Decarboxylase Beta From Escherichia Coli: Complex with Xenon:
4.1.1.15;

Protein crystallography data

The structure of Crystal Structure of Glutamate Decarboxylase Beta From Escherichia Coli: Complex with Xenon, PDB code: 3fz6 was solved by V.N.Malashkevich, D.De Biase, F.Bossa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.85 / 2.82
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 116.729, 116.729, 208.423, 90.00, 90.00, 120.00
R / Rfree (%) 13.5 / 20.3

Xenon Binding Sites:

The binding sites of Xenon atom in the Crystal Structure of Glutamate Decarboxylase Beta From Escherichia Coli: Complex with Xenon (pdb code 3fz6). This binding sites where shown within 5.0 Angstroms radius around Xenon atom.
In total 6 binding sites of Xenon where determined in the Crystal Structure of Glutamate Decarboxylase Beta From Escherichia Coli: Complex with Xenon, PDB code: 3fz6:
Jump to Xenon binding site number: 1; 2; 3; 4; 5; 6;

Xenon binding site 1 out of 6 in 3fz6

Go back to Xenon Binding Sites List in 3fz6
Xenon binding site 1 out of 6 in the Crystal Structure of Glutamate Decarboxylase Beta From Escherichia Coli: Complex with Xenon


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 1 of Crystal Structure of Glutamate Decarboxylase Beta From Escherichia Coli: Complex with Xenon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe501

b:11.4
occ:0.30
 O A:GLY120 3.6 9.7 1.0
CD2 A:LEU295 3.9 4.7 1.0
CB A:PHE313 4.2 27.2 1.0
C A:GLY120 4.3 8.8 1.0
N A:PHE313 4.3 27.9 1.0
N A:GLY120 4.5 8.4 1.0
CB A:THR121 4.5 8.1 1.0
O A:GLY311 4.6 37.7 1.0
CA A:GLY120 4.8 7.8 1.0
CA A:PHE313 4.8 27.1 1.0
CZ3 A:TRP289 4.9 12.2 1.0

Xenon binding site 2 out of 6 in 3fz6

Go back to Xenon Binding Sites List in 3fz6
Xenon binding site 2 out of 6 in the Crystal Structure of Glutamate Decarboxylase Beta From Escherichia Coli: Complex with Xenon


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 2 of Crystal Structure of Glutamate Decarboxylase Beta From Escherichia Coli: Complex with Xenon within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Xe501

b:19.0
occ:0.30
 CB B:PHE313 3.8 33.6 1.0
O B:GLY120 3.9 6.3 1.0
CD2 B:LEU295 3.9 11.5 1.0
N B:PHE313 4.0 34.7 1.0
C B:GLY120 4.3 7.3 1.0
CB B:THR121 4.4 15.6 1.0
CA B:PHE313 4.5 33.3 1.0
N B:GLY120 4.6 6.0 1.0
O B:GLY311 4.8 38.0 1.0
C B:THR312 4.8 35.7 1.0
CA B:GLY120 4.9 5.6 1.0
CZ3 B:TRP289 4.9 5.8 1.0
N B:THR121 4.9 10.1 1.0

Xenon binding site 3 out of 6 in 3fz6

Go back to Xenon Binding Sites List in 3fz6
Xenon binding site 3 out of 6 in the Crystal Structure of Glutamate Decarboxylase Beta From Escherichia Coli: Complex with Xenon


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 3 of Crystal Structure of Glutamate Decarboxylase Beta From Escherichia Coli: Complex with Xenon within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Xe501

b:2.1
occ:0.30
 O C:GLY120 3.7 9.9 1.0
CD2 C:LEU295 3.9 11.3 1.0
CB C:PHE313 4.0 25.5 1.0
C C:GLY120 4.2 8.3 1.0
N C:PHE313 4.2 26.9 1.0
O C:GLY311 4.4 38.2 1.0
CB C:THR121 4.4 6.8 1.0
O E:HOH737 4.4 17.7 1.0
N C:GLY120 4.5 8.3 1.0
CA C:GLY120 4.7 7.6 1.0
CA C:PHE313 4.8 25.8 1.0
CG1 C:VAL119 4.8 2.0 1.0
CZ3 C:TRP289 4.8 11.9 1.0
C C:THR312 4.9 29.2 1.0
CG2 C:VAL300 4.9 2.0 1.0
N C:THR121 4.9 7.3 1.0
OG1 C:THR121 5.0 3.5 1.0

Xenon binding site 4 out of 6 in 3fz6

Go back to Xenon Binding Sites List in 3fz6
Xenon binding site 4 out of 6 in the Crystal Structure of Glutamate Decarboxylase Beta From Escherichia Coli: Complex with Xenon


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 4 of Crystal Structure of Glutamate Decarboxylase Beta From Escherichia Coli: Complex with Xenon within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Xe501

b:15.0
occ:0.30
 O D:GLY120 3.7 6.8 1.0
CD2 D:LEU295 3.9 14.4 1.0
CB D:PHE313 4.1 24.1 1.0
N D:PHE313 4.2 26.1 1.0
C D:GLY120 4.2 6.6 1.0
O E:HOH720 4.3 22.3 1.0
N D:GLY120 4.5 7.5 1.0
CB D:THR121 4.5 8.7 1.0
CG1 D:VAL119 4.7 2.0 1.0
CA D:GLY120 4.7 6.5 1.0
CA D:PHE313 4.8 24.1 1.0
CZ3 D:TRP289 4.9 9.1 1.0
N D:THR121 5.0 6.7 1.0
O D:GLY311 5.0 36.4 1.0
C D:THR312 5.0 28.0 1.0

Xenon binding site 5 out of 6 in 3fz6

Go back to Xenon Binding Sites List in 3fz6
Xenon binding site 5 out of 6 in the Crystal Structure of Glutamate Decarboxylase Beta From Escherichia Coli: Complex with Xenon


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 5 of Crystal Structure of Glutamate Decarboxylase Beta From Escherichia Coli: Complex with Xenon within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Xe501

b:7.5
occ:0.30
 O E:GLY120 3.8 7.9 1.0
CB E:PHE313 4.0 26.0 1.0
CD2 E:LEU295 4.1 12.1 1.0
N E:PHE313 4.1 27.5 1.0
O E:HOH765 4.3 27.9 1.0
C E:GLY120 4.4 7.2 1.0
O E:HOH656 4.4 22.9 1.0
CB E:THR121 4.4 6.9 1.0
N E:GLY120 4.6 6.6 1.0
O E:GLY311 4.6 34.7 1.0
CA E:PHE313 4.7 26.3 1.0
C E:THR312 4.9 29.6 1.0
CA E:GLY120 4.9 6.7 1.0
CZ3 E:TRP289 5.0 10.0 1.0

Xenon binding site 6 out of 6 in 3fz6

Go back to Xenon Binding Sites List in 3fz6
Xenon binding site 6 out of 6 in the Crystal Structure of Glutamate Decarboxylase Beta From Escherichia Coli: Complex with Xenon


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 6 of Crystal Structure of Glutamate Decarboxylase Beta From Escherichia Coli: Complex with Xenon within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Xe501

b:22.6
occ:0.30
 N F:PHE313 3.8 28.0 1.0
CB F:PHE313 4.0 28.2 1.0
CD2 F:LEU295 4.0 11.2 1.0
O F:GLY120 4.2 3.9 1.0
O E:HOH749 4.3 10.1 1.0
CA F:PHE313 4.5 26.9 1.0
O F:GLY311 4.5 35.6 1.0
C F:THR312 4.7 30.0 1.0
C F:GLY120 4.7 4.4 1.0
N F:GLY120 4.8 6.0 1.0
O F:PHE313 4.8 25.7 1.0
CB F:THR121 4.8 6.8 1.0
CA F:THR312 4.9 32.5 1.0

Reference:

V.N.Malashkevich, D.De Biase, F.Bossa. Crystal Structure of Glutamate Decarboxylase Beta From Escherichia Coli: Complex with Xenon To Be Published.
Page generated: Sat Oct 12 18:43:28 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy