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Xenon in PDB 3fgr: Two Chain Form of the 66.3 kDa Protein at 1.8 Angstroem

Protein crystallography data

The structure of Two Chain Form of the 66.3 kDa Protein at 1.8 Angstroem, PDB code: 3fgr was solved by K.Lakomek, A.Dickmanns, R.Ficner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.26 / 1.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 148.737, 89.560, 64.811, 90.00, 98.69, 90.00
R / Rfree (%) 15.2 / 18.2

Other elements in 3fgr:

The structure of Two Chain Form of the 66.3 kDa Protein at 1.8 Angstroem also contains other interesting chemical elements:

Sodium (Na) 1 atom

Xenon Binding Sites:

The binding sites of Xenon atom in the Two Chain Form of the 66.3 kDa Protein at 1.8 Angstroem (pdb code 3fgr). This binding sites where shown within 5.0 Angstroms radius around Xenon atom.
In total only one binding site of Xenon was determined in the Two Chain Form of the 66.3 kDa Protein at 1.8 Angstroem, PDB code: 3fgr:

Xenon binding site 1 out of 1 in 3fgr

Go back to Xenon Binding Sites List in 3fgr
Xenon binding site 1 out of 1 in the Two Chain Form of the 66.3 kDa Protein at 1.8 Angstroem


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 1 of Two Chain Form of the 66.3 kDa Protein at 1.8 Angstroem within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Xe606

b:19.3
occ:0.10
CD2 B:LEU349 2.6 25.4 1.0
CG B:LEU349 3.3 19.9 1.0
ND2 A:ASN167 3.6 13.0 1.0
CE2 A:PHE163 3.7 20.1 1.0
CB B:CYS347 3.8 16.6 1.0
O B:CYS347 3.8 15.3 1.0
CZ A:PHE163 3.8 19.5 1.0
CB B:SER376 3.9 14.5 1.0
CG A:ASN167 3.9 15.4 1.0
N B:LEU349 4.0 13.7 1.0
OD1 A:ASN167 4.0 15.9 1.0
C B:CYS347 4.1 15.1 1.0
CA B:LEU349 4.1 14.5 1.0
O B:GLN343 4.2 17.7 1.0
C B:VAL348 4.3 13.8 1.0
CD1 B:LEU349 4.3 25.8 1.0
CB B:LEU349 4.4 15.4 1.0
O A:HOH34 4.6 16.7 1.0
N B:VAL348 4.6 13.5 1.0
CA B:CYS347 4.6 15.4 1.0
CA B:VAL348 4.7 13.2 1.0
O B:VAL348 4.7 12.8 1.0
CB A:ASN167 4.8 14.2 1.0
CA B:SER376 4.8 14.5 1.0
OG B:SER376 4.9 14.6 1.0
OG1 B:THR378 4.9 15.7 1.0

Reference:

K.Lakomek, A.Dickmanns, M.Kettwig, H.Urlaub, R.Ficner, T.Luebke. Initial Insight Into the Function of the Lysosomal 66.3 kDa Protein From Mouse By Means of X-Ray Crystallography Bmc Struct.Biol. V. 9 56 2009.
ISSN: ESSN 1472-6807
PubMed: 19706171
DOI: 10.1186/1472-6807-9-56
Page generated: Wed Dec 16 02:39:47 2020

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