Atomistry » Xenon, Xe » PDB 1w53-3pk4 » 3cyu
Atomistry »
  Xenon, Xe »
    PDB 1w53-3pk4 »
      3cyu »

Xenon in PDB 3cyu: Human Carbonic Anhydrase II Complexed with Cryptophane Biosensor and Xenon

Enzymatic activity of Human Carbonic Anhydrase II Complexed with Cryptophane Biosensor and Xenon

All present enzymatic activity of Human Carbonic Anhydrase II Complexed with Cryptophane Biosensor and Xenon:
4.2.1.1;

Protein crystallography data

The structure of Human Carbonic Anhydrase II Complexed with Cryptophane Biosensor and Xenon, PDB code: 3cyu was solved by J.A.Aaron, K.M.Jude, L.Di Costanzo, D.W.Christianson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.72 / 1.70
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 67.441, 49.985, 81.038, 90.00, 107.13, 90.00
R / Rfree (%) 22.6 / 24.9

Other elements in 3cyu:

The structure of Human Carbonic Anhydrase II Complexed with Cryptophane Biosensor and Xenon also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Xenon Binding Sites:

The binding sites of Xenon atom in the Human Carbonic Anhydrase II Complexed with Cryptophane Biosensor and Xenon (pdb code 3cyu). This binding sites where shown within 5.0 Angstroms radius around Xenon atom.
In total 2 binding sites of Xenon where determined in the Human Carbonic Anhydrase II Complexed with Cryptophane Biosensor and Xenon, PDB code: 3cyu:
Jump to Xenon binding site number: 1; 2;

Xenon binding site 1 out of 2 in 3cyu

Go back to Xenon Binding Sites List in 3cyu
Xenon binding site 1 out of 2 in the Human Carbonic Anhydrase II Complexed with Cryptophane Biosensor and Xenon


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 1 of Human Carbonic Anhydrase II Complexed with Cryptophane Biosensor and Xenon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe265

b:44.3
occ:0.50
C07 A:0CR263 4.1 42.1 0.2
C06 A:0CR263 4.1 42.0 0.2
C60 A:1CR264 4.1 44.3 0.2
C02 A:0CR263 4.2 42.1 0.2
C09 A:1CR264 4.2 43.7 0.2
C10 A:1CR264 4.2 43.5 0.2
C24 A:1CR264 4.2 44.4 0.2
C05 A:0CR263 4.2 42.3 0.2
C03 A:0CR263 4.2 42.0 0.2
C14 A:1CR264 4.3 43.8 0.2
C21 A:0CR263 4.3 43.0 0.2
C16 A:0CR263 4.3 43.0 0.2
C04 A:0CR263 4.3 42.3 0.2
C11 A:1CR264 4.3 43.5 0.2
C25 A:1CR264 4.3 44.4 0.2
C07 A:1CR264 4.3 43.7 0.2
C13 A:1CR264 4.4 43.4 0.2
C23 A:1CR264 4.4 44.6 0.2
C09 A:0CR263 4.4 42.5 0.2
C12 A:1CR264 4.4 43.2 0.2
C16 A:1CR264 4.4 44.6 0.2
C21 A:1CR264 4.4 44.7 0.2
C02 A:1CR264 4.4 43.8 0.2
C25 A:0CR263 4.4 44.2 0.2
C24 A:0CR263 4.4 44.5 0.2
C56 A:0CR263 4.4 43.9 0.2
C17 A:0CR263 4.4 43.4 0.2
C20 A:0CR263 4.4 43.1 0.2
C14 A:0CR263 4.4 42.8 0.2
C42 A:1CR264 4.4 44.8 0.2
C41 A:1CR264 4.4 44.9 0.2
C70 A:0CR263 4.5 44.5 0.2
C06 A:1CR264 4.5 43.5 0.2
C41 A:0CR263 4.5 43.9 0.2
C17 A:1CR264 4.5 44.9 0.2
C20 A:1CR264 4.5 45.3 0.2
C40 A:0CR263 4.5 43.5 0.2
C42 A:0CR263 4.5 44.0 0.2
C38 A:0CR263 4.6 43.6 0.2
C37 A:0CR263 4.6 43.9 0.2
C26 A:0CR263 4.6 44.6 0.2
C39 A:0CR263 4.6 43.5 0.2
C26 A:1CR264 4.6 44.5 0.2
C23 A:0CR263 4.6 44.3 0.2
C18 A:0CR263 4.6 43.5 0.2
C19 A:0CR263 4.6 43.1 0.2
C37 A:1CR264 4.6 44.8 0.2
C28 A:1CR264 4.6 44.4 0.2
C34 A:0CR263 4.6 44.5 0.2
C03 A:1CR264 4.6 43.7 0.2
C51 A:1CR264 4.6 46.0 0.2
C40 A:1CR264 4.7 44.7 0.2
C34 A:1CR264 4.7 45.2 0.2
C52 A:0CR263 4.7 43.0 0.2
C18 A:1CR264 4.7 45.3 0.2
C19 A:1CR264 4.7 45.5 0.2
C10 A:0CR263 4.7 42.4 0.2
C27 A:1CR264 4.7 44.5 0.2
C35 A:0CR263 4.7 44.5 0.2
C46 A:1CR264 4.7 44.8 0.2
C35 A:1CR264 4.7 45.2 0.2
C27 A:0CR263 4.7 44.5 0.2
C08 A:0CR263 4.7 42.5 0.2
C05 A:1CR264 4.7 43.5 0.2
C33 A:1CR264 4.7 45.2 0.2
C28 A:0CR263 4.8 44.7 0.2
C30 A:1CR264 4.8 45.0 0.2
C13 A:0CR263 4.8 42.7 0.2
C33 A:0CR263 4.8 44.5 0.2
C08 A:1CR264 4.8 43.5 0.2
C38 A:1CR264 4.8 44.9 0.2
C59 A:0CR263 4.8 43.8 0.2
C04 A:1CR264 4.8 43.8 0.2
C31 A:1CR264 4.8 45.3 0.2
C32 A:1CR264 4.8 45.6 0.2
O09 A:1CR264 4.8 45.0 0.2
C39 A:1CR264 4.8 44.7 0.2
C01 A:0CR263 4.8 42.5 0.2
C15 A:0CR263 4.9 42.9 0.2
C30 A:0CR263 4.9 44.6 0.2
O09 A:0CR263 4.9 44.0 0.2
C52 A:1CR264 4.9 44.4 0.2
C47 A:0CR263 4.9 43.7 0.2
C22 A:1CR264 5.0 44.5 0.2
C01 A:1CR264 5.0 44.4 0.2
C32 A:0CR263 5.0 44.7 0.2
O02 A:0CR263 5.0 42.1 0.2

Xenon binding site 2 out of 2 in 3cyu

Go back to Xenon Binding Sites List in 3cyu
Xenon binding site 2 out of 2 in the Human Carbonic Anhydrase II Complexed with Cryptophane Biosensor and Xenon


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 2 of Human Carbonic Anhydrase II Complexed with Cryptophane Biosensor and Xenon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe266

b:42.1
occ:0.37
CD2 A:PHE226 3.2 36.5 1.0
CE2 A:PHE226 3.4 37.4 1.0
CG A:PHE226 3.6 32.9 1.0
CG2 A:VAL223 3.7 35.0 1.0
CB A:ALA116 3.8 22.6 1.0
CA A:VAL223 3.9 29.8 1.0
CZ A:PHE226 4.0 34.9 1.0
CD2 A:LEU148 4.0 23.2 1.0
CB A:VAL223 4.0 31.9 1.0
CD1 A:PHE226 4.1 34.9 1.0
CB A:PHE226 4.2 30.4 1.0
CB A:TRP97 4.2 25.2 1.0
CE1 A:PHE226 4.3 34.6 1.0
CG A:TRP97 4.6 24.3 1.0
N A:VAL223 4.8 27.6 1.0
O A:VAL223 4.8 30.6 1.0
C A:VAL223 4.9 30.3 1.0
CG2 A:VAL218 5.0 24.3 1.0

Reference:

J.A.Aaron, J.M.Chambers, K.M.Jude, L.Di Costanzo, I.J.Dmochowski, D.W.Christianson. Structure of A 129XE-Cryptophane Biosensor Complexed with Human Carbonic Anhydrase II. J.Am.Chem.Soc. V. 130 6942 2008.
ISSN: ISSN 0002-7863
PubMed: 18461940
DOI: 10.1021/JA802214X
Page generated: Sat Oct 12 18:40:16 2024

Last articles

Zn in 1MC5
Zn in 1MFM
Zn in 1MA0
Zn in 1MED
Zn in 1MEA
Zn in 1MBX
Zn in 1MA3
Zn in 1M9O
Zn in 1M9R
Zn in 1M9Q
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy