The binding sites of Xenon atom in the structure of Crystal Structure of Bacteriorhodopsin-Xenon Complex (pdb code 2zfe). This binding sites where shown with 5.0 Angstroms radius around Xenon atom.
The 2zfe structure was solved by T.KOUYAMA, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
| Resolution (A) | 15.0-2.5 | | Space group | P622 | | a (A) | 102.410 | | b (A) | 102.410 | | c (A) | 112.470 | | alpha (°) | 90.00 | | beta (°) | 90.00 | | gamma (°) | 120.00 | | Rfactor (%) | 25 | | Rfree (%) | 27.9 |
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Xenon binding site 1 out of 1 in 2zfe
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Click to enlarge | 
Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Xenon in the PDB 2zfe. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Xenon atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Pro91, A: Leu94, A: Leu95, A: Ala98, A: Ile108, A: Leu111, A: Val112, A: Hoh639, | conact list:
| Atom | Atom | Distance (A) | | Xe | O A:Pro91 | 4.37 | | Xe | O A:Leu94 | 3.95 | | Xe | CB A:Leu94 | 3.71 | | Xe | CD2 A:Leu94 | 4.98 | | Xe | C A:Leu94 | 3.73 | | Xe | CG A:Leu94 | 4.55 | | Xe | CA A:Leu94 | 4.37 | | Xe | N A:Leu95 | 3.64 | | Xe | CB A:Leu95 | 4.43 | | Xe | CD1 A:Leu95 | 4.23 | | Xe | CA A:Leu95 | 3.82 | | Xe | CB A:Ala98 | 4.30 | | Xe | O A:Ile108 | 3.76 | | Xe | CB A:Ile108 | 4.16 | | Xe | CG2 A:Ile108 | 3.44 | | Xe | C A:Ile108 | 4.33 | | Xe | CG1 A:Ile108 | 4.44 | | Xe | CA A:Ile108 | 4.06 | | Xe | CB A:Leu111 | 4.25 | | Xe | N A:Val112 | 4.62 | | Xe | CB A:Val112 | 4.92 | | Xe | CG2 A:Val112 | 3.62 | | Xe | O A:Hoh639 | 3.93 |
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