Xenon in PDB 2z8y: Xenon-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase(Codh/Acs) From Moorella Thermoacetica

All present enzymatic activity of Xenon-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase(Codh/Acs) From Moorella Thermoacetica:
1.2.7.4; 1.2.99.2; 2.3.1.169;

The structure of Xenon-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase(Codh/Acs) From Moorella Thermoacetica, PDB code: 2z8y was solved by T.I.Doukov, L.C.Blasiak, C.L.Drennan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.00 / 2.51
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	99.540, 136.600, 141.750, 101.29, 109.22, 103.91
R / Rfree (%)	17.8 / 25

The structure of Xenon-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase(Codh/Acs) From Moorella Thermoacetica also contains other interesting chemical elements:

Nickel	(Ni)	8 atoms
Iron	(Fe)	56 atoms
Copper	(Cu)	4 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 42;

Binding sites:

The binding sites of Xenon atom in the Xenon-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase(Codh/Acs) From Moorella Thermoacetica (pdb code 2z8y). This binding sites where shown within 5.0 Angstroms radius around Xenon atom.
In total 42 binding sites of Xenon where determined in the Xenon-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase(Codh/Acs) From Moorella Thermoacetica, PDB code: 2z8y:
Jump to Xenon binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Xenon binding site 1 out of 42 in the Xenon-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase(Codh/Acs) From Moorella Thermoacetica


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 1 of Xenon-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase(Codh/Acs) From Moorella Thermoacetica within 5.0Å range: probe atom residue distance (Å) B Occ A:Xe1001 b:23.8 occ:0.15 CG2 A:THR602 3.3 10.1 1.0 CA A:GLY592 3.7 13.5 1.0 SG A:CYS468 3.7 23.4 1.0 CD1 A:TRP595 3.7 15.9 1.0 CB A:ALA580 3.8 16.2 1.0 N A:ALA580 3.9 16.1 1.0 O A:HIS603 4.1 15.9 1.0 N A:GLY592 4.1 14.8 1.0 CB A:ALA578 4.2 14.9 1.0 C A:SER579 4.2 16.3 1.0 NE1 A:TRP595 4.3 19.8 1.0 CG2 A:ILE591 4.4 11.6 1.0 N A:SER579 4.5 14.4 1.0 CA A:ALA580 4.5 16.4 1.0 C A:ALA578 4.6 15.8 1.0 CA A:SER579 4.6 14.9 1.0 CB A:THR602 4.7 14.0 1.0 C A:ILE591 4.7 14.4 1.0 CG A:TRP595 4.8 15.9 1.0 O A:SER579 4.8 15.7 1.0 CG2 A:VAL604 4.8 14.8 1.0 O A:ILE591 4.8 16.2 1.0 C A:GLY592 4.9 13.0 1.0 O A:ALA588 4.9 17.3 1.0 O A:ALA578 5.0 17.2 1.0

Xenon binding site 2 out of 42 in the Xenon-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase(Codh/Acs) From Moorella Thermoacetica


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 2 of Xenon-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase(Codh/Acs) From Moorella Thermoacetica within 5.0Å range: probe atom residue distance (Å) B Occ A:Xe1002 b:27.3 occ:1.00 CZ A:PHE632 3.7 2.5 1.0 CG2 A:VAL102 3.8 10.4 1.0 CG A:PRO608 3.9 11.5 1.0 OG1 A:THR593 4.0 15.8 1.0 O A:ALA589 4.0 12.8 1.0 CB A:PRO608 4.0 10.8 1.0 CB A:ALA589 4.1 14.2 1.0 CA A:ALA589 4.1 14.6 1.0 CE1 A:PHE632 4.2 11.9 1.0 CE2 A:PHE632 4.3 6.5 1.0 C A:ALA589 4.5 13.7 1.0 CG1 A:ILE106 4.8 11.6 1.0 CD1 A:ILE106 4.8 2.0 1.0 CZ A:PHE634 5.0 9.2 1.0

Xenon binding site 3 out of 42 in the Xenon-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase(Codh/Acs) From Moorella Thermoacetica


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 3 of Xenon-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase(Codh/Acs) From Moorella Thermoacetica within 5.0Å range: probe atom residue distance (Å) B Occ A:Xe1003 b:30.5 occ:0.60 XE A:XE1003 0.0 30.5 0.6 XE A:XE1003 2.8 14.0 0.2 CD1 A:ILE106 3.6 2.0 1.0 CD2 A:LEU620 3.6 15.3 1.0 CB A:ALA234 4.0 7.6 1.0 CG1 A:VAL102 4.1 9.1 1.0 CG1 A:VAL231 4.2 13.7 1.0 OG1 A:THR593 4.3 15.8 1.0 CD1 A:LEU620 4.4 18.7 1.0 CG2 A:THR593 4.4 11.7 1.0 XE A:XE1004 4.4 30.1 0.8 CG A:LEU620 4.6 17.6 1.0 CG2 A:VAL102 4.9 10.4 1.0

Xenon binding site 4 out of 42 in the Xenon-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase(Codh/Acs) From Moorella Thermoacetica


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 4 of Xenon-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase(Codh/Acs) From Moorella Thermoacetica within 5.0Å range: probe atom residue distance (Å) B Occ A:Xe1003 b:14.0 occ:0.19 XE A:XE1003 0.0 14.0 0.2 XE A:XE1003 2.8 30.5 0.6 CG1 A:VAL102 3.2 9.1 1.0 CB A:ALA234 3.6 7.6 1.0 O A:ALA99 4.0 14.4 1.0 CA A:ALA99 4.1 10.3 1.0 CG2 A:VAL231 4.2 13.9 1.0 CA A:VAL231 4.2 13.4 1.0 CB A:ALA99 4.3 9.0 1.0 N A:GLY103 4.4 11.1 1.0 CB A:VAL102 4.6 12.8 1.0 C A:ALA99 4.6 11.7 1.0 CB A:VAL231 4.6 13.5 1.0 CD1 A:ILE106 4.6 2.0 1.0 CG1 A:VAL231 4.6 13.7 1.0 CA A:GLY103 4.7 11.0 1.0 O A:LEU230 4.8 12.7 1.0 N A:VAL231 4.8 11.7 1.0 C A:VAL102 5.0 11.3 1.0

Xenon binding site 5 out of 42 in the Xenon-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase(Codh/Acs) From Moorella Thermoacetica


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 5 of Xenon-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase(Codh/Acs) From Moorella Thermoacetica within 5.0Å range: probe atom residue distance (Å) B Occ A:Xe1004 b:30.1 occ:0.84 CD2 A:LEU620 3.3 15.3 1.0 CD1 A:ILE235 3.9 3.9 1.0 CG1 A:VAL231 3.9 13.7 1.0 CG1 A:VAL596 3.9 7.9 1.0 CG1 A:ILE235 4.2 14.3 1.0 CE2 A:PHE632 4.3 6.5 1.0 XE A:XE1003 4.4 30.5 0.6 CB A:VAL596 4.5 12.4 1.0 CG2 A:THR593 4.6 11.7 1.0 CA A:LEU620 4.6 15.6 1.0 CB A:ALA624 4.6 16.0 1.0 CG A:LEU620 4.7 17.6 1.0 CD2 A:PHE632 4.8 5.9 1.0 CB A:LEU620 5.0 16.3 1.0

Xenon binding site 6 out of 42 in the Xenon-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase(Codh/Acs) From Moorella Thermoacetica


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 6 of Xenon-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase(Codh/Acs) From Moorella Thermoacetica within 5.0Å range: probe atom residue distance (Å) B Occ A:Xe1005 b:24.5 occ:1.00 CG2 M:THR31 3.8 8.9 1.0 CG2 A:ILE623 3.8 11.5 1.0 CG1 A:VAL228 4.0 10.5 1.0 CG2 A:VAL627 4.0 13.4 1.0 CE1 A:PHE232 4.1 14.0 1.0 CZ A:PHE232 4.4 8.0 1.0 CG2 A:VAL228 4.4 12.4 1.0 CG M:TYR35 4.5 15.4 1.0 CD1 A:ILE619 4.5 9.4 1.0 CD1 M:TYR35 4.5 10.6 1.0 CB A:ILE623 4.6 14.4 1.0 CG2 A:ILE619 4.6 11.6 1.0 CB M:TYR35 4.6 15.0 1.0 CG1 A:ILE619 4.7 10.0 1.0 CB A:VAL627 4.8 13.4 1.0 CB A:VAL228 4.8 13.2 1.0 CG1 A:VAL627 4.9 12.4 1.0 CD2 M:TYR35 4.9 17.2 1.0

Xenon binding site 7 out of 42 in the Xenon-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase(Codh/Acs) From Moorella Thermoacetica


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 7 of Xenon-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase(Codh/Acs) From Moorella Thermoacetica within 5.0Å range: probe atom residue distance (Å) B Occ A:Xe1010 b:32.0 occ:0.41 O A:SER396 3.3 18.7 1.0 C A:SER396 3.6 21.4 1.0 CD1 A:LEU287 3.6 22.9 1.0 CG2 A:THR374 3.7 10.8 1.0 CB A:ALA400 3.8 18.9 1.0 CB A:SER396 3.8 23.7 1.0 CD1 A:TYR388 3.9 28.5 1.0 CD1 A:ILE386 4.0 16.1 1.0 CE1 A:TYR388 4.0 36.3 1.0 N A:ALA397 4.0 20.2 1.0 CA A:ALA397 4.1 20.0 1.0 CA A:SER396 4.2 22.7 1.0 SG A:CYS350 4.2 16.8 1.0 CG2 A:ILE386 4.4 15.6 1.0 CD1 A:ILE291 4.4 26.9 1.0 CB A:ILE386 4.5 16.9 1.0 CB A:THR374 4.8 12.2 1.0 CG1 A:ILE386 4.9 18.3 1.0 CA A:ALA400 4.9 21.3 1.0 N A:ALA400 5.0 21.0 1.0 C A:ALA397 5.0 20.7 1.0

Xenon binding site 8 out of 42 in the Xenon-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase(Codh/Acs) From Moorella Thermoacetica


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 8 of Xenon-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase(Codh/Acs) From Moorella Thermoacetica within 5.0Å range: probe atom residue distance (Å) B Occ B:Xe1001 b:32.3 occ:0.13 SG B:CYS468 3.3 21.7 1.0 CB B:ALA580 3.4 14.3 1.0 CG2 B:THR602 3.5 8.9 1.0 N B:ALA580 3.7 14.4 1.0 CD1 B:TRP595 3.9 11.6 1.0 CA B:GLY592 3.9 13.8 1.0 O B:HIS603 4.0 15.8 1.0 C B:SER579 4.0 14.9 1.0 CA B:ALA580 4.1 15.6 1.0 N B:SER579 4.2 13.6 1.0 N B:GLY592 4.3 14.9 1.0 CA B:SER579 4.4 14.5 1.0 CG2 B:ILE591 4.4 12.9 1.0 CB B:ALA578 4.5 10.9 1.0 O B:SER579 4.5 15.0 1.0 C B:ALA578 4.5 13.8 1.0 NE1 B:TRP595 4.5 10.7 1.0 O B:ALA578 4.8 12.0 1.0 C B:ILE591 4.8 15.1 1.0 CG B:TRP595 4.8 10.0 1.0 CB B:THR602 4.9 13.8 1.0 O B:ILE591 5.0 17.5 1.0

Xenon binding site 9 out of 42 in the Xenon-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase(Codh/Acs) From Moorella Thermoacetica


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 9 of Xenon-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase(Codh/Acs) From Moorella Thermoacetica within 5.0Å range: probe atom residue distance (Å) B Occ B:Xe1002 b:25.3 occ:1.00 CG B:PRO608 3.7 16.5 1.0 CZ B:PHE632 3.8 7.6 1.0 O B:ALA589 3.8 12.9 1.0 OG1 B:THR593 3.9 16.5 1.0 CG2 B:VAL102 3.9 10.1 1.0 CB B:PRO608 4.0 12.4 1.0 CB B:ALA589 4.0 9.4 1.0 CA B:ALA589 4.1 11.6 1.0 CE1 B:PHE632 4.2 5.0 1.0 C B:ALA589 4.4 12.6 1.0 CE2 B:PHE632 4.5 7.5 1.0 CD1 B:ILE106 4.8 3.4 1.0 CG1 B:ILE106 4.9 6.8 1.0

Xenon binding site 10 out of 42 in the Xenon-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase(Codh/Acs) From Moorella Thermoacetica


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 10 of Xenon-Bound Structure of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase(Codh/Acs) From Moorella Thermoacetica within 5.0Å range: probe atom residue distance (Å) B Occ B:Xe1003 b:26.6 occ:0.56 XE B:XE1003 0.0 26.6 0.6 XE B:XE1003 2.7 25.7 0.3 CD1 B:ILE106 3.7 3.4 1.0 CD2 B:LEU620 3.7 18.5 1.0 CB B:ALA234 4.1 12.7 1.0 CG2 B:THR593 4.1 10.1 1.0 OG1 B:THR593 4.3 16.5 1.0 CG1 B:VAL102 4.4 10.9 1.0 CD1 B:LEU620 4.4 14.0 1.0 XE B:XE1004 4.5 29.9 0.9 CG1 B:VAL231 4.5 8.7 1.0 CG B:LEU620 4.7 17.1 1.0 O B:VAL231 4.9 13.7 1.0 CB B:THR593 4.9 14.5 1.0

T.I.Doukov, L.C.Blasiak, J.Seravalli, S.W.Ragsdale, C.L.Drennan. Xenon in and at the End of the Tunnel of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase Biochemistry V. 47 3474 2008.
ISSN: ISSN 0006-2960
PubMed: 18293927
DOI: 10.1021/BI702386T