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Xenon in PDB 2fic: The Crystal Structure of the Bar Domain From Human BIN1/Amphiphysin II and Its Implications For Molecular Recognition

Protein crystallography data

The structure of The Crystal Structure of the Bar Domain From Human BIN1/Amphiphysin II and Its Implications For Molecular Recognition, PDB code: 2fic was solved by E.Casal, L.Federici, W.Zhang, J.Fernandez-Recio, E.M.Priego, R.N.Miguel, J.B.Duhadaway, G.C.Prendergast, B.F.Luisi, E.D.Laue, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.99
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 69.922, 59.086, 75.009, 90.00, 117.53, 90.00
R / Rfree (%) 23 / 28

Xenon Binding Sites:

The binding sites of Xenon atom in the The Crystal Structure of the Bar Domain From Human BIN1/Amphiphysin II and Its Implications For Molecular Recognition (pdb code 2fic). This binding sites where shown within 5.0 Angstroms radius around Xenon atom.
In total 2 binding sites of Xenon where determined in the The Crystal Structure of the Bar Domain From Human BIN1/Amphiphysin II and Its Implications For Molecular Recognition, PDB code: 2fic:
Jump to Xenon binding site number: 1; 2;

Xenon binding site 1 out of 2 in 2fic

Go back to Xenon Binding Sites List in 2fic
Xenon binding site 1 out of 2 in the The Crystal Structure of the Bar Domain From Human BIN1/Amphiphysin II and Its Implications For Molecular Recognition


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 1 of The Crystal Structure of the Bar Domain From Human BIN1/Amphiphysin II and Its Implications For Molecular Recognition within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe1001

b:35.7
occ:0.50
CG2 A:VAL218 4.1 11.9 1.0
CB A:TYR217 4.2 11.5 1.0
N A:VAL218 4.8 10.8 1.0
O A:VAL214 4.9 14.7 1.0

Xenon binding site 2 out of 2 in 2fic

Go back to Xenon Binding Sites List in 2fic
Xenon binding site 2 out of 2 in the The Crystal Structure of the Bar Domain From Human BIN1/Amphiphysin II and Its Implications For Molecular Recognition


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 2 of The Crystal Structure of the Bar Domain From Human BIN1/Amphiphysin II and Its Implications For Molecular Recognition within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Xe1002

b:52.0
occ:0.30
CG2 B:VAL218 3.6 15.6 1.0
CA B:VAL218 3.8 16.1 1.0
N B:VAL218 3.8 17.0 1.0
C B:TYR217 3.9 17.7 1.0
O B:TYR217 3.9 17.8 1.0
CB B:TYR217 4.0 17.4 1.0
CB B:VAL218 4.3 16.2 1.0
CD1 B:PHE221 4.6 18.0 1.0
CA B:TYR217 4.7 17.8 1.0
CB B:PHE221 4.9 15.1 1.0
C B:VAL218 5.0 16.2 1.0

Reference:

E.Casal, L.Federici, W.Zhang, J.Fernandez-Recio, E.M.Priego, R.N.Miguel, J.B.Duhadaway, G.C.Prendergast, B.F.Luisi, E.D.Laue. The Crystal Structure of the Bar Domain From Human BIN1/Amphiphysin II and Its Implications For Molecular Recognition Biochemistry V. 45 12917 2006.
ISSN: ISSN 0006-2960
PubMed: 17059209
DOI: 10.1021/BI060717K
Page generated: Wed Dec 16 02:39:36 2020

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