Xenon in PDB 1w2z: Psao and Xenon
Enzymatic activity of Psao and Xenon
All present enzymatic activity of Psao and Xenon:
1.4.3.6;
Protein crystallography data
The structure of Psao and Xenon, PDB code: 1w2z
was solved by
A.P.Duff,
D.M.Trambaiolo,
A.E.Cohen,
P.J.Ellis,
G.A.Juda,
E.M.Shepard,
D.B.Langley,
D.M.Dooley,
H.C.Freeman,
J.M.Guss,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
29.88 /
2.24
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
89.507,
196.268,
89.665,
90.00,
107.46,
90.00
|
|
R / Rfree (%)
|
17.9 /
22.4
|
Other elements in 1w2z:
The structure of Psao and Xenon also contains other interesting chemical elements:
Xenon Binding Sites:
The binding sites of Xenon atom in the Psao and Xenon
(pdb code 1w2z). This binding sites where shown within
5.0 Angstroms radius around Xenon atom.
In total 8 binding sites of Xenon where determined in the
Psao and Xenon, PDB code: 1w2z:
Jump to Xenon binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Xenon binding site 1 out
of 8 in 1w2z
Go back to
Xenon Binding Sites List in 1w2z
Xenon binding site 1 out
of 8 in the Psao and Xenon
 Mono view
 Stereo pair view
|
|
A full contact list of Xenon with other atoms in the Xe binding
site number 1 of Psao and Xenon within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Xe710
b:32.5
occ:0.78
|
HD21
|
A:LEU622
|
3.2
|
11.0
|
1.0
|
|
HG21
|
A:VAL508
|
3.2
|
13.7
|
1.0
|
|
O
|
A:TYR523
|
3.4
|
10.9
|
1.0
|
|
HB2
|
A:LEU525
|
3.4
|
17.4
|
1.0
|
|
HA
|
A:ARG524
|
3.5
|
12.5
|
1.0
|
|
HB3
|
A:TYR523
|
3.6
|
11.1
|
1.0
|
|
H
|
A:VAL508
|
3.6
|
12.0
|
1.0
|
|
HZ
|
A:PHE452
|
3.7
|
14.6
|
1.0
|
|
N
|
A:LEU525
|
3.7
|
14.8
|
1.0
|
|
C
|
A:ARG524
|
3.7
|
13.8
|
1.0
|
|
H
|
A:LEU525
|
3.7
|
15.1
|
1.0
|
|
CZ
|
A:PHE452
|
3.7
|
15.2
|
1.0
|
|
HE3
|
A:MET595
|
3.8
|
18.8
|
1.0
|
|
HE2
|
A:PHE452
|
3.8
|
13.1
|
1.0
|
|
CE2
|
A:PHE452
|
3.8
|
13.5
|
1.0
|
|
C
|
A:TYR523
|
3.8
|
11.9
|
1.0
|
|
CA
|
A:ARG524
|
4.0
|
11.9
|
1.0
|
|
HG22
|
A:VAL508
|
4.0
|
13.7
|
1.0
|
|
CG2
|
A:VAL508
|
4.0
|
14.2
|
1.0
|
|
HE2
|
A:MET595
|
4.1
|
18.8
|
1.0
|
|
CD2
|
A:LEU622
|
4.1
|
8.8
|
1.0
|
|
N
|
A:ARG524
|
4.1
|
12.7
|
1.0
|
|
HB
|
A:VAL508
|
4.1
|
12.3
|
1.0
|
|
SD
|
A:MET595
|
4.2
|
17.3
|
1.0
|
|
CE
|
A:MET595
|
4.2
|
19.3
|
1.0
|
|
HD22
|
A:LEU622
|
4.2
|
11.0
|
1.0
|
|
O
|
A:ARG524
|
4.2
|
11.4
|
1.0
|
|
CB
|
A:LEU525
|
4.2
|
18.4
|
1.0
|
|
HA
|
A:LEU525
|
4.3
|
16.7
|
1.0
|
|
CA
|
A:LEU525
|
4.3
|
16.8
|
1.0
|
|
N
|
A:VAL508
|
4.3
|
12.3
|
1.0
|
|
HA
|
A:VAL507
|
4.3
|
11.8
|
1.0
|
|
CB
|
A:TYR523
|
4.4
|
8.7
|
1.0
|
|
HD23
|
A:LEU622
|
4.4
|
11.0
|
1.0
|
|
CE1
|
A:PHE452
|
4.4
|
16.8
|
1.0
|
|
HB2
|
A:TYR523
|
4.4
|
11.1
|
1.0
|
|
CD2
|
A:PHE452
|
4.5
|
7.8
|
1.0
|
|
HB3
|
A:LEU525
|
4.5
|
17.4
|
1.0
|
|
O
|
A:LEU506
|
4.5
|
13.5
|
1.0
|
|
CB
|
A:VAL508
|
4.6
|
13.2
|
1.0
|
|
HB3
|
A:LEU622
|
4.6
|
11.8
|
1.0
|
|
H
|
A:ARG524
|
4.7
|
12.2
|
1.0
|
|
HA
|
A:LEU622
|
4.7
|
12.0
|
1.0
|
|
HE1
|
A:PHE452
|
4.7
|
14.4
|
1.0
|
|
HG23
|
A:VAL508
|
4.8
|
13.7
|
1.0
|
|
CA
|
A:TYR523
|
4.8
|
12.0
|
1.0
|
|
HD11
|
A:LEU525
|
4.9
|
17.5
|
1.0
|
|
HD2
|
A:PHE452
|
4.9
|
11.4
|
1.0
|
|
Xenon binding site 2 out
of 8 in 1w2z
Go back to
Xenon Binding Sites List in 1w2z
Xenon binding site 2 out
of 8 in the Psao and Xenon
 Mono view
 Stereo pair view
|
|
A full contact list of Xenon with other atoms in the Xe binding
site number 2 of Psao and Xenon within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Xe711
b:47.3
occ:0.21
|
HG21
|
A:THR618
|
3.2
|
22.4
|
1.0
|
|
HD11
|
A:LEU407
|
3.2
|
33.7
|
1.0
|
|
HG
|
A:LEU407
|
3.3
|
29.4
|
1.0
|
|
HG22
|
A:THR618
|
3.3
|
22.4
|
1.0
|
|
HD13
|
A:LEU407
|
3.4
|
33.7
|
1.0
|
|
HB2
|
A:LEU407
|
3.4
|
18.0
|
1.0
|
|
HG23
|
A:ILE405
|
3.5
|
20.1
|
1.0
|
|
CD1
|
A:LEU407
|
3.6
|
35.2
|
1.0
|
|
HE1
|
A:TYR446
|
3.6
|
13.4
|
1.0
|
|
HG12
|
A:ILE601
|
3.7
|
22.4
|
1.0
|
|
HG22
|
A:ILE601
|
3.7
|
23.4
|
1.0
|
|
CG2
|
A:THR618
|
3.7
|
23.5
|
1.0
|
|
OG1
|
A:THR618
|
3.8
|
19.0
|
1.0
|
|
CG
|
A:LEU407
|
3.8
|
29.0
|
1.0
|
|
O
|
A:ILE405
|
3.9
|
14.1
|
1.0
|
|
HD12
|
A:ILE601
|
4.0
|
24.2
|
1.0
|
|
OH
|
A:TYR446
|
4.0
|
16.6
|
1.0
|
|
HG23
|
A:ILE601
|
4.1
|
23.4
|
1.0
|
|
CB
|
A:LEU407
|
4.1
|
18.0
|
1.0
|
|
O
|
A:LEU616
|
4.1
|
18.8
|
1.0
|
|
CE1
|
A:TYR446
|
4.3
|
10.6
|
1.0
|
|
HD21
|
A:LEU616
|
4.3
|
26.2
|
1.0
|
|
CG2
|
A:ILE601
|
4.3
|
24.7
|
1.0
|
|
HB
|
A:ILE405
|
4.3
|
17.4
|
1.0
|
|
HA
|
A:ALA406
|
4.3
|
13.5
|
1.0
|
|
H
|
A:LEU407
|
4.4
|
13.5
|
1.0
|
|
CG2
|
A:ILE405
|
4.4
|
20.6
|
1.0
|
|
CB
|
A:THR618
|
4.4
|
18.2
|
1.0
|
|
HG
|
A:LEU616
|
4.5
|
24.9
|
1.0
|
|
HG23
|
A:THR618
|
4.5
|
22.4
|
1.0
|
|
CG1
|
A:ILE601
|
4.5
|
20.5
|
1.0
|
|
N
|
A:LEU407
|
4.5
|
12.9
|
1.0
|
|
HD12
|
A:LEU407
|
4.5
|
33.7
|
1.0
|
|
CZ
|
A:TYR446
|
4.5
|
15.1
|
1.0
|
|
HB3
|
A:LEU616
|
4.6
|
18.7
|
1.0
|
|
C
|
A:ILE405
|
4.6
|
14.2
|
1.0
|
|
CD1
|
A:ILE601
|
4.6
|
25.5
|
1.0
|
|
H
|
A:THR618
|
4.6
|
19.9
|
1.0
|
|
HG22
|
A:ILE405
|
4.8
|
20.1
|
1.0
|
|
HB2
|
A:HIS444
|
4.8
|
13.3
|
1.0
|
|
HB3
|
A:LEU407
|
4.8
|
18.0
|
1.0
|
|
HD11
|
A:ILE601
|
4.8
|
24.2
|
1.0
|
|
C
|
A:ALA406
|
4.9
|
13.7
|
1.0
|
|
CB
|
A:ILE405
|
4.9
|
16.3
|
1.0
|
|
N
|
A:THR618
|
4.9
|
19.7
|
1.0
|
|
CA
|
A:LEU407
|
4.9
|
15.3
|
1.0
|
|
CA
|
A:ALA406
|
4.9
|
13.2
|
1.0
|
|
HG21
|
A:ILE405
|
5.0
|
20.1
|
1.0
|
|
CD2
|
A:LEU616
|
5.0
|
25.8
|
1.0
|
|
Xenon binding site 3 out
of 8 in 1w2z
Go back to
Xenon Binding Sites List in 1w2z
Xenon binding site 3 out
of 8 in the Psao and Xenon
 Mono view
 Stereo pair view
|
|
A full contact list of Xenon with other atoms in the Xe binding
site number 3 of Psao and Xenon within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Xe710
b:35.7
occ:0.78
|
HD21
|
B:LEU622
|
3.2
|
11.2
|
1.0
|
|
HG21
|
B:VAL508
|
3.2
|
13.6
|
1.0
|
|
O
|
B:TYR523
|
3.4
|
11.1
|
1.0
|
|
HB2
|
B:LEU525
|
3.5
|
17.4
|
1.0
|
|
HE2
|
B:PHE452
|
3.5
|
13.2
|
1.0
|
|
H
|
B:VAL508
|
3.6
|
12.0
|
1.0
|
|
HA
|
B:ARG524
|
3.6
|
12.5
|
1.0
|
|
HB3
|
B:TYR523
|
3.7
|
10.9
|
1.0
|
|
CE2
|
B:PHE452
|
3.7
|
14.9
|
1.0
|
|
N
|
B:LEU525
|
3.7
|
15.3
|
1.0
|
|
H
|
B:LEU525
|
3.8
|
15.1
|
1.0
|
|
C
|
B:ARG524
|
3.8
|
13.9
|
1.0
|
|
HZ
|
B:PHE452
|
3.9
|
14.3
|
1.0
|
|
C
|
B:TYR523
|
3.9
|
12.1
|
1.0
|
|
CZ
|
B:PHE452
|
3.9
|
12.4
|
1.0
|
|
HG22
|
B:VAL508
|
3.9
|
13.6
|
1.0
|
|
CG2
|
B:VAL508
|
4.0
|
11.8
|
1.0
|
|
CD2
|
B:LEU622
|
4.0
|
11.2
|
1.0
|
|
CA
|
B:ARG524
|
4.0
|
12.0
|
1.0
|
|
HB
|
B:VAL508
|
4.1
|
12.3
|
1.0
|
|
HD22
|
B:LEU622
|
4.1
|
11.2
|
1.0
|
|
SD
|
B:MET595
|
4.1
|
18.0
|
1.0
|
|
N
|
B:ARG524
|
4.2
|
12.8
|
1.0
|
|
HE3
|
B:MET595
|
4.2
|
18.8
|
1.0
|
|
HE2
|
B:MET595
|
4.2
|
18.8
|
1.0
|
|
O
|
B:ARG524
|
4.3
|
11.3
|
1.0
|
|
HA
|
B:LEU525
|
4.3
|
16.7
|
1.0
|
|
CB
|
B:LEU525
|
4.3
|
18.7
|
1.0
|
|
HA
|
B:VAL507
|
4.3
|
11.8
|
1.0
|
|
HD23
|
B:LEU622
|
4.3
|
11.2
|
1.0
|
|
N
|
B:VAL508
|
4.3
|
12.3
|
1.0
|
|
CA
|
B:LEU525
|
4.3
|
17.1
|
1.0
|
|
CD2
|
B:PHE452
|
4.4
|
11.8
|
1.0
|
|
CE
|
B:MET595
|
4.4
|
18.1
|
1.0
|
|
CB
|
B:TYR523
|
4.4
|
8.7
|
1.0
|
|
HB2
|
B:TYR523
|
4.4
|
10.9
|
1.0
|
|
CB
|
B:VAL508
|
4.5
|
12.7
|
1.0
|
|
HB3
|
B:LEU622
|
4.5
|
11.9
|
1.0
|
|
O
|
B:LEU506
|
4.5
|
13.6
|
1.0
|
|
HB3
|
B:LEU525
|
4.6
|
17.4
|
1.0
|
|
HD2
|
B:PHE452
|
4.7
|
11.7
|
1.0
|
|
CE1
|
B:PHE452
|
4.7
|
12.1
|
1.0
|
|
H
|
B:ARG524
|
4.8
|
12.2
|
1.0
|
|
HG23
|
B:VAL508
|
4.8
|
13.6
|
1.0
|
|
CA
|
B:TYR523
|
4.8
|
11.7
|
1.0
|
|
HA
|
B:LEU622
|
4.8
|
12.1
|
1.0
|
|
HD11
|
B:LEU525
|
4.8
|
17.5
|
1.0
|
|
Xenon binding site 4 out
of 8 in 1w2z
Go back to
Xenon Binding Sites List in 1w2z
Xenon binding site 4 out
of 8 in the Psao and Xenon
 Mono view
 Stereo pair view
|
|
A full contact list of Xenon with other atoms in the Xe binding
site number 4 of Psao and Xenon within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Xe711
b:51.5
occ:0.21
|
HG21
|
B:THR618
|
3.1
|
22.5
|
1.0
|
|
HB2
|
B:LEU407
|
3.1
|
18.2
|
1.0
|
|
HD11
|
B:LEU407
|
3.2
|
33.9
|
1.0
|
|
HG22
|
B:THR618
|
3.3
|
22.5
|
1.0
|
|
HG23
|
B:ILE405
|
3.3
|
20.1
|
1.0
|
|
HD13
|
B:LEU407
|
3.5
|
33.9
|
1.0
|
|
CG2
|
B:THR618
|
3.6
|
24.2
|
1.0
|
|
HE1
|
B:TYR446
|
3.7
|
13.8
|
1.0
|
|
O
|
B:HOH2133
|
3.7
|
35.7
|
1.0
|
|
CD1
|
B:LEU407
|
3.7
|
36.2
|
1.0
|
|
HG22
|
B:ILE601
|
3.7
|
23.4
|
1.0
|
|
OG1
|
B:THR618
|
3.8
|
15.9
|
1.0
|
|
O
|
B:ILE405
|
3.8
|
14.2
|
1.0
|
|
HG12
|
B:ILE601
|
3.9
|
22.6
|
1.0
|
|
HG
|
B:LEU407
|
4.0
|
29.5
|
1.0
|
|
CB
|
B:LEU407
|
4.0
|
20.2
|
1.0
|
|
O
|
B:LEU616
|
4.0
|
18.6
|
1.0
|
|
OH
|
B:TYR446
|
4.1
|
19.6
|
1.0
|
|
HD21
|
B:LEU616
|
4.1
|
26.3
|
1.0
|
|
CG
|
B:LEU407
|
4.1
|
30.5
|
1.0
|
|
HB
|
B:ILE405
|
4.2
|
17.2
|
1.0
|
|
HA
|
B:ALA406
|
4.2
|
13.5
|
1.0
|
|
HG23
|
B:ILE601
|
4.2
|
23.4
|
1.0
|
|
H
|
B:LEU407
|
4.2
|
13.5
|
1.0
|
|
CG2
|
B:ILE405
|
4.3
|
21.9
|
1.0
|
|
CE1
|
B:TYR446
|
4.3
|
14.6
|
1.0
|
|
N
|
B:LEU407
|
4.4
|
13.0
|
1.0
|
|
CB
|
B:THR618
|
4.4
|
21.9
|
1.0
|
|
HG23
|
B:THR618
|
4.4
|
22.5
|
1.0
|
|
CG2
|
B:ILE601
|
4.4
|
24.0
|
1.0
|
|
C
|
B:ILE405
|
4.4
|
14.3
|
1.0
|
|
HD12
|
B:ILE601
|
4.5
|
24.2
|
1.0
|
|
H
|
B:THR618
|
4.6
|
20.0
|
1.0
|
|
HG
|
B:LEU616
|
4.6
|
24.9
|
1.0
|
|
CZ
|
B:TYR446
|
4.6
|
14.6
|
1.0
|
|
HB3
|
B:LEU407
|
4.6
|
18.2
|
1.0
|
|
HD12
|
B:LEU407
|
4.6
|
33.9
|
1.0
|
|
HG22
|
B:ILE405
|
4.6
|
20.1
|
1.0
|
|
C
|
B:ALA406
|
4.7
|
14.0
|
1.0
|
|
CB
|
B:ILE405
|
4.7
|
14.5
|
1.0
|
|
CA
|
B:ALA406
|
4.8
|
13.2
|
1.0
|
|
HB3
|
B:LEU616
|
4.8
|
18.6
|
1.0
|
|
CA
|
B:LEU407
|
4.8
|
15.4
|
1.0
|
|
CG1
|
B:ILE601
|
4.8
|
25.0
|
1.0
|
|
HG21
|
B:ILE405
|
4.8
|
20.1
|
1.0
|
|
HB2
|
B:HIS444
|
4.8
|
13.1
|
1.0
|
|
N
|
B:THR618
|
4.9
|
20.2
|
1.0
|
|
CD2
|
B:LEU616
|
4.9
|
26.2
|
1.0
|
|
N
|
B:ALA406
|
4.9
|
14.0
|
1.0
|
|
Xenon binding site 5 out
of 8 in 1w2z
Go back to
Xenon Binding Sites List in 1w2z
Xenon binding site 5 out
of 8 in the Psao and Xenon
 Mono view
 Stereo pair view
|
|
A full contact list of Xenon with other atoms in the Xe binding
site number 5 of Psao and Xenon within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Xe710
b:32.4
occ:0.78
|
HG21
|
C:VAL508
|
3.2
|
13.8
|
1.0
|
|
HD21
|
C:LEU622
|
3.4
|
11.1
|
1.0
|
|
O
|
C:TYR523
|
3.4
|
11.5
|
1.0
|
|
HB2
|
C:LEU525
|
3.4
|
17.3
|
1.0
|
|
HE3
|
C:MET595
|
3.5
|
18.8
|
1.0
|
|
HA
|
C:ARG524
|
3.6
|
12.5
|
1.0
|
|
HE2
|
C:PHE452
|
3.6
|
13.1
|
1.0
|
|
H
|
C:VAL508
|
3.6
|
12.0
|
1.0
|
|
HB3
|
C:TYR523
|
3.7
|
11.0
|
1.0
|
|
H
|
C:LEU525
|
3.7
|
15.1
|
1.0
|
|
N
|
C:LEU525
|
3.7
|
14.9
|
1.0
|
|
CE2
|
C:PHE452
|
3.7
|
13.7
|
1.0
|
|
HZ
|
C:PHE452
|
3.7
|
14.5
|
1.0
|
|
C
|
C:ARG524
|
3.8
|
13.7
|
1.0
|
|
CZ
|
C:PHE452
|
3.8
|
13.9
|
1.0
|
|
C
|
C:TYR523
|
3.9
|
12.0
|
1.0
|
|
HG22
|
C:VAL508
|
3.9
|
13.8
|
1.0
|
|
HE2
|
C:MET595
|
3.9
|
18.8
|
1.0
|
|
CG2
|
C:VAL508
|
3.9
|
15.6
|
1.0
|
|
CE
|
C:MET595
|
4.0
|
19.6
|
1.0
|
|
CA
|
C:ARG524
|
4.0
|
11.9
|
1.0
|
|
HB
|
C:VAL508
|
4.1
|
12.3
|
1.0
|
|
N
|
C:ARG524
|
4.1
|
12.0
|
1.0
|
|
SD
|
C:MET595
|
4.2
|
15.9
|
1.0
|
|
HA
|
C:LEU525
|
4.2
|
16.7
|
1.0
|
|
CD2
|
C:LEU622
|
4.2
|
10.2
|
1.0
|
|
CB
|
C:LEU525
|
4.3
|
17.9
|
1.0
|
|
O
|
C:ARG524
|
4.3
|
11.8
|
1.0
|
|
CA
|
C:LEU525
|
4.3
|
16.9
|
1.0
|
|
HD22
|
C:LEU622
|
4.3
|
11.1
|
1.0
|
|
HA
|
C:VAL507
|
4.3
|
11.8
|
1.0
|
|
N
|
C:VAL508
|
4.3
|
12.0
|
1.0
|
|
CB
|
C:TYR523
|
4.4
|
9.8
|
1.0
|
|
HB2
|
C:TYR523
|
4.5
|
11.0
|
1.0
|
|
CD2
|
C:PHE452
|
4.5
|
10.7
|
1.0
|
|
O
|
C:LEU506
|
4.5
|
13.4
|
1.0
|
|
CB
|
C:VAL508
|
4.5
|
13.2
|
1.0
|
|
HB3
|
C:LEU622
|
4.6
|
11.9
|
1.0
|
|
HB3
|
C:LEU525
|
4.6
|
17.3
|
1.0
|
|
HD23
|
C:LEU622
|
4.6
|
11.1
|
1.0
|
|
CE1
|
C:PHE452
|
4.6
|
16.4
|
1.0
|
|
HG23
|
C:VAL508
|
4.7
|
13.8
|
1.0
|
|
H
|
C:ARG524
|
4.7
|
12.2
|
1.0
|
|
HA
|
C:LEU622
|
4.7
|
12.0
|
1.0
|
|
HD2
|
C:PHE452
|
4.8
|
11.6
|
1.0
|
|
CA
|
C:TYR523
|
4.8
|
11.6
|
1.0
|
|
HD12
|
C:LEU525
|
4.8
|
17.5
|
1.0
|
|
HE1
|
C:MET595
|
4.9
|
18.8
|
1.0
|
|
Xenon binding site 6 out
of 8 in 1w2z
Go back to
Xenon Binding Sites List in 1w2z
Xenon binding site 6 out
of 8 in the Psao and Xenon
 Mono view
 Stereo pair view
|
|
A full contact list of Xenon with other atoms in the Xe binding
site number 6 of Psao and Xenon within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Xe711
b:49.2
occ:0.21
|
HD11
|
C:LEU407
|
3.2
|
33.7
|
1.0
|
|
HG22
|
C:THR618
|
3.2
|
22.3
|
1.0
|
|
HB2
|
C:LEU407
|
3.3
|
18.1
|
1.0
|
|
HG
|
C:LEU407
|
3.3
|
29.4
|
1.0
|
|
O
|
C:HOH2113
|
3.3
|
35.2
|
1.0
|
|
HD13
|
C:LEU407
|
3.3
|
33.7
|
1.0
|
|
HG23
|
C:THR618
|
3.4
|
22.3
|
1.0
|
|
HG23
|
C:ILE405
|
3.5
|
20.2
|
1.0
|
|
HG12
|
C:ILE601
|
3.5
|
22.4
|
1.0
|
|
HE1
|
C:TYR446
|
3.6
|
13.5
|
1.0
|
|
CD1
|
C:LEU407
|
3.6
|
35.0
|
1.0
|
|
CG2
|
C:THR618
|
3.8
|
22.4
|
1.0
|
|
CG
|
C:LEU407
|
3.8
|
29.4
|
1.0
|
|
HG22
|
C:ILE601
|
3.8
|
23.4
|
1.0
|
|
OG1
|
C:THR618
|
3.9
|
18.2
|
1.0
|
|
CB
|
C:LEU407
|
4.0
|
18.2
|
1.0
|
|
O
|
C:ILE405
|
4.0
|
14.1
|
1.0
|
|
HD12
|
C:ILE601
|
4.1
|
24.3
|
1.0
|
|
OH
|
C:TYR446
|
4.1
|
13.2
|
1.0
|
|
HB
|
C:ILE405
|
4.2
|
17.6
|
1.0
|
|
CE1
|
C:TYR446
|
4.2
|
11.0
|
1.0
|
|
O
|
C:LEU616
|
4.2
|
18.8
|
1.0
|
|
HG23
|
C:ILE601
|
4.3
|
23.4
|
1.0
|
|
CG1
|
C:ILE601
|
4.4
|
22.0
|
1.0
|
|
CG2
|
C:ILE405
|
4.4
|
21.3
|
1.0
|
|
H
|
C:LEU407
|
4.4
|
13.5
|
1.0
|
|
HA
|
C:ALA406
|
4.5
|
13.5
|
1.0
|
|
CG2
|
C:ILE601
|
4.5
|
25.1
|
1.0
|
|
HD12
|
C:LEU407
|
4.5
|
33.7
|
1.0
|
|
CB
|
C:THR618
|
4.5
|
20.0
|
1.0
|
|
HG
|
C:LEU616
|
4.5
|
24.9
|
1.0
|
|
HG21
|
C:THR618
|
4.5
|
22.3
|
1.0
|
|
N
|
C:LEU407
|
4.6
|
13.2
|
1.0
|
|
CZ
|
C:TYR446
|
4.6
|
15.1
|
1.0
|
|
CD1
|
C:ILE601
|
4.6
|
25.6
|
1.0
|
|
HB2
|
C:HIS444
|
4.6
|
13.2
|
1.0
|
|
HB3
|
C:LEU407
|
4.7
|
18.1
|
1.0
|
|
C
|
C:ILE405
|
4.7
|
14.4
|
1.0
|
|
HD11
|
C:ILE601
|
4.7
|
24.3
|
1.0
|
|
HG22
|
C:ILE405
|
4.7
|
20.2
|
1.0
|
|
HB3
|
C:LEU616
|
4.7
|
18.7
|
1.0
|
|
HD21
|
C:LEU616
|
4.8
|
26.3
|
1.0
|
|
H
|
C:THR618
|
4.8
|
19.9
|
1.0
|
|
CB
|
C:ILE405
|
4.8
|
18.9
|
1.0
|
|
CA
|
C:LEU407
|
4.9
|
15.4
|
1.0
|
|
C
|
C:ALA406
|
4.9
|
13.7
|
1.0
|
|
Xenon binding site 7 out
of 8 in 1w2z
Go back to
Xenon Binding Sites List in 1w2z
Xenon binding site 7 out
of 8 in the Psao and Xenon
 Mono view
 Stereo pair view
|
|
A full contact list of Xenon with other atoms in the Xe binding
site number 7 of Psao and Xenon within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Xe710
b:33.5
occ:0.78
|
HD21
|
D:LEU622
|
3.3
|
11.3
|
1.0
|
|
HG21
|
D:VAL508
|
3.3
|
13.8
|
1.0
|
|
O
|
D:TYR523
|
3.4
|
11.2
|
1.0
|
|
HB2
|
D:LEU525
|
3.4
|
17.4
|
1.0
|
|
HA
|
D:ARG524
|
3.6
|
12.5
|
1.0
|
|
HE3
|
D:MET595
|
3.6
|
19.0
|
1.0
|
|
HE2
|
D:PHE452
|
3.6
|
13.2
|
1.0
|
|
H
|
D:VAL508
|
3.6
|
12.0
|
1.0
|
|
HB3
|
D:TYR523
|
3.6
|
11.0
|
1.0
|
|
CE2
|
D:PHE452
|
3.7
|
12.5
|
1.0
|
|
HZ
|
D:PHE452
|
3.7
|
14.6
|
1.0
|
|
N
|
D:LEU525
|
3.7
|
15.4
|
1.0
|
|
H
|
D:LEU525
|
3.7
|
15.1
|
1.0
|
|
CZ
|
D:PHE452
|
3.8
|
15.9
|
1.0
|
|
C
|
D:ARG524
|
3.8
|
13.7
|
1.0
|
|
C
|
D:TYR523
|
3.8
|
11.9
|
1.0
|
|
HE2
|
D:MET595
|
3.9
|
19.0
|
1.0
|
|
HG22
|
D:VAL508
|
4.0
|
13.8
|
1.0
|
|
CG2
|
D:VAL508
|
4.0
|
14.7
|
1.0
|
|
CA
|
D:ARG524
|
4.0
|
12.0
|
1.0
|
|
CE
|
D:MET595
|
4.0
|
20.3
|
1.0
|
|
HB
|
D:VAL508
|
4.1
|
12.2
|
1.0
|
|
N
|
D:ARG524
|
4.1
|
12.7
|
1.0
|
|
CD2
|
D:LEU622
|
4.1
|
13.0
|
1.0
|
|
SD
|
D:MET595
|
4.1
|
19.7
|
1.0
|
|
HD22
|
D:LEU622
|
4.2
|
11.3
|
1.0
|
|
CB
|
D:LEU525
|
4.3
|
18.3
|
1.0
|
|
O
|
D:ARG524
|
4.3
|
11.1
|
1.0
|
|
HA
|
D:LEU525
|
4.3
|
16.7
|
1.0
|
|
HA
|
D:VAL507
|
4.3
|
11.8
|
1.0
|
|
N
|
D:VAL508
|
4.3
|
11.8
|
1.0
|
|
CA
|
D:LEU525
|
4.3
|
16.8
|
1.0
|
|
HD23
|
D:LEU622
|
4.4
|
11.3
|
1.0
|
|
CB
|
D:TYR523
|
4.4
|
10.6
|
1.0
|
|
CD2
|
D:PHE452
|
4.4
|
12.3
|
1.0
|
|
HB2
|
D:TYR523
|
4.4
|
11.0
|
1.0
|
|
O
|
D:LEU506
|
4.5
|
13.4
|
1.0
|
|
CB
|
D:VAL508
|
4.5
|
12.6
|
1.0
|
|
CE1
|
D:PHE452
|
4.6
|
16.6
|
1.0
|
|
HB3
|
D:LEU525
|
4.6
|
17.4
|
1.0
|
|
HB3
|
D:LEU622
|
4.6
|
11.9
|
1.0
|
|
H
|
D:ARG524
|
4.7
|
12.2
|
1.0
|
|
HD2
|
D:PHE452
|
4.7
|
11.7
|
1.0
|
|
CA
|
D:TYR523
|
4.8
|
11.3
|
1.0
|
|
HA
|
D:LEU622
|
4.8
|
12.0
|
1.0
|
|
HG23
|
D:VAL508
|
4.8
|
13.8
|
1.0
|
|
HD11
|
D:LEU525
|
4.8
|
17.4
|
1.0
|
|
HE1
|
D:MET595
|
4.9
|
19.0
|
1.0
|
|
HE1
|
D:PHE452
|
5.0
|
14.4
|
1.0
|
|
Xenon binding site 8 out
of 8 in 1w2z
Go back to
Xenon Binding Sites List in 1w2z
Xenon binding site 8 out
of 8 in the Psao and Xenon
 Mono view
 Stereo pair view
|
|
A full contact list of Xenon with other atoms in the Xe binding
site number 8 of Psao and Xenon within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Xe711
b:55.3
occ:0.21
|
HG21
|
D:THR618
|
3.2
|
22.5
|
1.0
|
|
HD11
|
D:LEU407
|
3.2
|
33.8
|
1.0
|
|
HG22
|
D:THR618
|
3.3
|
22.5
|
1.0
|
|
HG
|
D:LEU407
|
3.3
|
29.2
|
1.0
|
|
HG23
|
D:ILE405
|
3.3
|
20.2
|
1.0
|
|
HB2
|
D:LEU407
|
3.3
|
17.8
|
1.0
|
|
HG22
|
D:ILE601
|
3.4
|
23.5
|
1.0
|
|
HD13
|
D:LEU407
|
3.5
|
33.8
|
1.0
|
|
O
|
D:HOH2138
|
3.5
|
30.8
|
1.0
|
|
CG2
|
D:THR618
|
3.6
|
23.9
|
1.0
|
|
CD1
|
D:LEU407
|
3.7
|
36.0
|
1.0
|
|
HE1
|
D:TYR446
|
3.7
|
13.9
|
1.0
|
|
OG1
|
D:THR618
|
3.7
|
18.9
|
1.0
|
|
HG23
|
D:ILE601
|
3.8
|
23.5
|
1.0
|
|
CG
|
D:LEU407
|
3.8
|
28.8
|
1.0
|
|
O
|
D:ILE405
|
3.9
|
14.0
|
1.0
|
|
CB
|
D:LEU407
|
4.0
|
15.2
|
1.0
|
|
HG12
|
D:ILE601
|
4.0
|
22.4
|
1.0
|
|
CG2
|
D:ILE601
|
4.1
|
25.1
|
1.0
|
|
O
|
D:LEU616
|
4.1
|
19.0
|
1.0
|
|
OH
|
D:TYR446
|
4.2
|
19.3
|
1.0
|
|
CG2
|
D:ILE405
|
4.2
|
22.9
|
1.0
|
|
HB
|
D:ILE405
|
4.2
|
17.5
|
1.0
|
|
HG
|
D:LEU616
|
4.2
|
25.1
|
1.0
|
|
CE1
|
D:TYR446
|
4.3
|
15.0
|
1.0
|
|
H
|
D:LEU407
|
4.3
|
13.5
|
1.0
|
|
HD12
|
D:ILE601
|
4.3
|
24.2
|
1.0
|
|
HA
|
D:ALA406
|
4.4
|
13.5
|
1.0
|
|
CB
|
D:THR618
|
4.4
|
20.5
|
1.0
|
|
N
|
D:LEU407
|
4.4
|
12.8
|
1.0
|
|
HG23
|
D:THR618
|
4.4
|
22.5
|
1.0
|
|
HG22
|
D:ILE405
|
4.5
|
20.2
|
1.0
|
|
HD22
|
D:LEU616
|
4.5
|
26.4
|
1.0
|
|
C
|
D:ILE405
|
4.6
|
14.6
|
1.0
|
|
HD12
|
D:LEU407
|
4.6
|
33.8
|
1.0
|
|
CZ
|
D:TYR446
|
4.6
|
17.6
|
1.0
|
|
HG21
|
D:ILE601
|
4.7
|
23.5
|
1.0
|
|
HB2
|
D:HIS444
|
4.7
|
13.1
|
1.0
|
|
HB3
|
D:LEU407
|
4.7
|
17.8
|
1.0
|
|
H
|
D:THR618
|
4.7
|
19.9
|
1.0
|
|
CB
|
D:ILE405
|
4.8
|
17.2
|
1.0
|
|
CG1
|
D:ILE601
|
4.8
|
21.2
|
1.0
|
|
C
|
D:ALA406
|
4.8
|
13.9
|
1.0
|
|
CA
|
D:LEU407
|
4.8
|
15.1
|
1.0
|
|
HB3
|
D:LEU616
|
4.8
|
18.8
|
1.0
|
|
HG21
|
D:ILE405
|
4.8
|
20.2
|
1.0
|
|
CD1
|
D:ILE601
|
4.9
|
25.5
|
1.0
|
|
CA
|
D:ALA406
|
4.9
|
12.8
|
1.0
|
|
Reference:
A.P.Duff,
D.M.Trambaiolo,
A.E.Cohen,
P.J.Ellis,
G.A.Juda,
E.M.Shepard,
D.B.Langley,
D.M.Dooley,
H.C.Freeman,
J.M.Guss.
Using Xenon As A Probe For Dioxygen-Binding Sites in Copper Amine Oxidases. J.Mol.Biol. V. 344 599 2004.
ISSN: ISSN 0022-2836
PubMed: 15533431
DOI: 10.1016/J.JMB.2004.09.075
Page generated: Sat Oct 12 18:11:26 2024
|
