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Xenon in PDB 1uyu: Xenon Complex of Wildtype P450CAM From Pseudomonas Putida

Protein crystallography data

The structure of Xenon Complex of Wildtype P450CAM From Pseudomonas Putida, PDB code: 1uyu was solved by R.C.Wade, P.J.Winn, I.Schlichting, X.Sudarko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.84 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 67.200, 62.300, 95.300, 90.00, 90.50, 90.00
R / Rfree (%) 18.7 / 23.6

Other elements in 1uyu:

The structure of Xenon Complex of Wildtype P450CAM From Pseudomonas Putida also contains other interesting chemical elements:

Potassium (K) 3 atoms
Iron (Fe) 2 atoms

Xenon Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Xenon atom in the Xenon Complex of Wildtype P450CAM From Pseudomonas Putida (pdb code 1uyu). This binding sites where shown within 5.0 Angstroms radius around Xenon atom.
In total 11 binding sites of Xenon where determined in the Xenon Complex of Wildtype P450CAM From Pseudomonas Putida, PDB code: 1uyu:
Jump to Xenon binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Xenon binding site 1 out of 11 in 1uyu

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Xenon binding site 1 out of 11 in the Xenon Complex of Wildtype P450CAM From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 1 of Xenon Complex of Wildtype P450CAM From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe1418

b:29.9
occ:0.40
XE A:XE1418 0.0 29.9 0.4
XE A:XE1418 1.6 35.8 0.3
CB A:LEU245 3.8 33.0 1.0
XE A:XE1421 3.8 65.3 0.2
CG1 A:ILE220 3.9 30.0 1.0
CB A:ALA219 3.9 27.2 1.0
CD1 A:LEU245 3.9 35.3 1.0
CZ A:PHE163 4.2 28.1 0.5
O A:CYS242 4.2 30.2 1.0
SG A:CYS242 4.3 34.9 1.0
CA A:CYS242 4.3 30.3 1.0
N A:ILE220 4.4 27.5 1.0
CE1 A:PHE163 4.4 27.9 0.5
CB A:ALA167 4.4 29.2 1.0
C A:ALA219 4.4 27.7 1.0
CB A:CYS242 4.4 30.0 1.0
CE2 A:PHE163 4.5 27.1 0.5
CG A:LEU245 4.5 34.0 1.0
CZ A:PHE163 4.6 26.7 0.5
O A:ALA219 4.7 27.9 1.0
CA A:ILE220 4.7 28.6 1.0
C A:CYS242 4.7 29.6 1.0
CD1 A:ILE220 4.8 32.1 1.0
CA A:ALA219 4.8 27.5 1.0
CB A:ILE220 5.0 29.1 1.0
CA A:ALA167 5.0 29.4 1.0

Xenon binding site 2 out of 11 in 1uyu

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Xenon binding site 2 out of 11 in the Xenon Complex of Wildtype P450CAM From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 2 of Xenon Complex of Wildtype P450CAM From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe1418

b:35.8
occ:0.30
XE A:XE1418 0.0 35.8 0.3
XE A:XE1418 1.6 29.9 0.4
CZ A:PHE163 3.5 28.1 0.5
O A:CYS242 3.6 30.2 1.0
CG1 A:ILE220 3.7 30.0 1.0
CD1 A:ILE220 4.0 32.1 1.0
CB A:ALA167 4.0 29.2 1.0
CG A:LEU246 4.1 37.4 1.0
CD1 A:LEU246 4.1 39.7 1.0
CE1 A:PHE163 4.2 27.9 0.5
CB A:CYS242 4.2 30.0 1.0
CE2 A:PHE163 4.3 27.1 0.5
C A:CYS242 4.3 29.6 1.0
CA A:CYS242 4.3 30.3 1.0
CB A:LEU245 4.4 33.0 1.0
CE2 A:PHE163 4.4 28.5 0.5
N A:LEU246 4.5 33.1 1.0
SG A:CYS242 4.6 34.9 1.0
CZ A:PHE163 4.8 26.7 0.5
XE A:XE1421 4.8 65.3 0.2
CB A:LEU246 4.8 34.5 1.0
CA A:LEU246 4.9 33.8 1.0
C A:LEU245 5.0 32.9 1.0

Xenon binding site 3 out of 11 in 1uyu

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Xenon binding site 3 out of 11 in the Xenon Complex of Wildtype P450CAM From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 3 of Xenon Complex of Wildtype P450CAM From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe1419

b:36.2
occ:0.40
CB A:SER260 3.6 30.3 1.0
CD2 A:LEU371 3.6 34.4 1.0
CG2 A:THR370 3.8 26.2 1.0
CG A:LEU371 3.9 31.5 1.0
CD2 A:LEU257 4.0 28.7 1.0
CG A:MET261 4.0 34.2 1.0
O A:LEU257 4.1 27.6 1.0
SD A:MET261 4.2 39.4 1.0
N A:MET261 4.4 29.9 1.0
CB A:THR370 4.4 26.1 1.0
OG A:SER260 4.5 30.9 1.0
C A:SER260 4.6 30.3 1.0
CA A:LEU257 4.6 27.7 1.0
O A:ILE367 4.6 24.8 1.0
N A:LEU371 4.7 27.3 1.0
CA A:SER260 4.7 30.3 1.0
CD1 A:LEU371 4.8 33.5 1.0
CG2 A:ILE367 4.8 26.8 1.0
C A:LEU257 4.8 28.0 1.0
CA A:MET261 4.9 30.6 1.0
CB A:LEU257 4.9 28.0 1.0
CA A:LEU371 4.9 27.7 1.0
CB A:MET261 5.0 30.9 1.0
CB A:LEU371 5.0 28.3 1.0

Xenon binding site 4 out of 11 in 1uyu

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Xenon binding site 4 out of 11 in the Xenon Complex of Wildtype P450CAM From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 4 of Xenon Complex of Wildtype P450CAM From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe1420

b:31.4
occ:0.30
CB A:LEU375 3.8 29.3 1.0
O A:LEU274 3.9 29.3 1.0
OG1 A:THR376 3.9 34.1 1.0
O A:LYS372 3.9 26.8 1.0
N A:THR376 4.0 31.0 1.0
CE A:LYS372 4.0 39.2 1.0
CD A:LYS372 4.1 36.9 1.0
C A:LEU375 4.1 30.7 1.0
CB A:PRO278 4.2 33.4 1.0
CA A:ILE275 4.2 30.4 1.0
CD1 A:ILE281 4.3 32.0 1.0
C A:LEU274 4.5 30.6 1.0
CA A:LEU375 4.5 29.4 1.0
CA A:THR376 4.5 32.4 1.0
O A:LEU375 4.6 31.3 1.0
CA A:LYS372 4.6 28.1 1.0
N A:ILE275 4.7 30.2 1.0
C A:LYS372 4.7 27.6 1.0
O A:LEU371 4.8 27.1 1.0
O A:ILE275 4.8 29.9 1.0
CG1 A:ILE275 4.8 30.7 1.0
CB A:THR376 4.9 32.2 1.0
CD1 A:LEU375 4.9 30.9 1.0
O A:HOH2179 4.9 37.3 1.0
CA A:PRO278 4.9 33.5 1.0
CG A:PRO278 4.9 33.7 1.0
CG A:LYS372 5.0 32.7 1.0
CG A:LEU375 5.0 29.2 1.0

Xenon binding site 5 out of 11 in 1uyu

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Xenon binding site 5 out of 11 in the Xenon Complex of Wildtype P450CAM From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 5 of Xenon Complex of Wildtype P450CAM From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe1421

b:65.3
occ:0.20
CZ A:PHE163 2.6 26.7 0.5
CE1 A:PHE163 2.8 27.6 0.5
CE1 A:PHE163 3.2 27.9 0.5
CE2 A:PHE163 3.5 27.1 0.5
CD2 A:LEU166 3.6 38.2 1.0
CG1 A:VAL119 3.7 40.9 1.0
CD1 A:PHE163 3.7 27.2 0.5
CB A:ALA219 3.7 27.2 1.0
CD1 A:PHE163 3.8 27.8 0.5
CG A:LEU166 3.8 34.9 1.0
XE A:XE1418 3.8 29.9 0.4
CZ A:PHE163 4.2 28.1 0.5
CD2 A:PHE163 4.3 26.9 0.5
CB A:LEU245 4.4 33.0 1.0
CG A:PHE163 4.5 27.0 0.5
O A:VAL118 4.5 39.3 1.0
CD1 A:LEU245 4.6 35.3 1.0
CB A:VAL118 4.7 38.8 1.0
CB A:LEU166 4.7 31.4 1.0
CD2 A:LEU245 4.8 34.9 1.0
CG A:LEU245 4.8 34.0 1.0
CG2 A:VAL118 4.8 38.6 1.0
XE A:XE1418 4.8 35.8 0.3
CD1 A:LEU166 4.9 37.8 1.0
CG A:PHE163 5.0 26.9 0.5

Xenon binding site 6 out of 11 in 1uyu

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Xenon binding site 6 out of 11 in the Xenon Complex of Wildtype P450CAM From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 6 of Xenon Complex of Wildtype P450CAM From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Xe1419

b:26.4
occ:0.30
XE B:XE1419 0.0 26.4 0.3
XE B:XE1419 1.7 39.2 0.3
CB B:LEU245 3.8 29.4 1.0
CG1 B:ILE220 3.8 30.2 1.0
CD1 B:LEU245 3.9 32.4 1.0
XE B:XE1422 3.9 61.3 0.3
CB B:ALA219 4.0 32.2 1.0
CB B:ALA167 4.1 31.7 1.0
CZ B:PHE163 4.1 37.3 1.0
SG B:CYS242 4.3 29.7 1.0
O B:CYS242 4.3 25.0 1.0
CA B:CYS242 4.3 25.8 1.0
CB B:CYS242 4.4 26.0 1.0
N B:ILE220 4.4 30.1 1.0
CG B:LEU245 4.5 30.1 1.0
C B:ALA219 4.5 31.1 1.0
CD1 B:ILE220 4.6 27.8 1.0
CE1 B:PHE163 4.7 38.5 1.0
CA B:ILE220 4.7 29.4 1.0
O B:ALA219 4.7 30.3 1.0
C B:CYS242 4.8 25.3 1.0
CA B:ALA167 4.8 31.5 1.0
CA B:ALA219 4.9 32.4 1.0
CB B:ILE220 4.9 28.9 1.0
CE2 B:PHE163 4.9 37.0 1.0

Xenon binding site 7 out of 11 in 1uyu

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Xenon binding site 7 out of 11 in the Xenon Complex of Wildtype P450CAM From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 7 of Xenon Complex of Wildtype P450CAM From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Xe1419

b:39.2
occ:0.30
XE B:XE1419 0.0 39.2 0.3
XE B:XE1419 1.7 26.4 0.3
O B:CYS242 3.5 25.0 1.0
CG1 B:ILE220 3.6 30.2 1.0
CZ B:PHE163 3.8 37.3 1.0
CD1 B:ILE220 3.9 27.8 1.0
CB B:ALA167 4.0 31.7 1.0
CB B:CYS242 4.0 26.0 1.0
CG B:LEU246 4.0 35.2 1.0
CA B:CYS242 4.1 25.8 1.0
C B:CYS242 4.2 25.3 1.0
CE2 B:PHE163 4.2 37.0 1.0
CB B:LEU245 4.3 29.4 1.0
N B:LEU246 4.4 30.2 1.0
SG B:CYS242 4.4 29.7 1.0
CD1 B:LEU246 4.5 37.0 1.0
CB B:LEU246 4.7 31.6 1.0
CA B:LEU246 4.7 31.1 1.0
CE1 B:PHE163 4.8 38.5 1.0
C B:LEU245 4.9 29.4 1.0
CD2 B:LEU204 5.0 24.6 1.0

Xenon binding site 8 out of 11 in 1uyu

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Xenon binding site 8 out of 11 in the Xenon Complex of Wildtype P450CAM From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 8 of Xenon Complex of Wildtype P450CAM From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Xe1420

b:37.2
occ:0.40
XE B:XE1420 0.0 37.2 0.4
XE B:XE1420 1.1 35.0 0.3
CB B:SER260 3.6 29.2 1.0
CG B:MET261 3.9 37.1 1.0
O B:LEU257 4.0 28.4 1.0
N B:MET261 4.0 31.1 1.0
CG2 B:THR370 4.0 32.3 1.0
CD2 B:LEU371 4.0 37.5 1.0
SD B:MET261 4.1 41.2 1.0
C B:SER260 4.2 30.4 1.0
CA B:MET261 4.4 32.4 1.0
O B:HOH2238 4.4 38.1 1.0
CD2 B:LEU257 4.4 31.0 1.0
CG B:LEU371 4.5 36.2 1.0
CB B:MET261 4.5 33.4 1.0
CD1 B:LEU264 4.6 37.6 1.0
CA B:SER260 4.6 29.1 1.0
OG B:SER260 4.6 31.3 1.0
CA B:LEU257 4.7 26.9 1.0
O B:SER260 4.8 29.8 1.0
C B:LEU257 4.8 27.5 1.0
CB B:THR370 4.8 32.7 1.0

Xenon binding site 9 out of 11 in 1uyu

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Xenon binding site 9 out of 11 in the Xenon Complex of Wildtype P450CAM From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 9 of Xenon Complex of Wildtype P450CAM From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Xe1420

b:35.0
occ:0.30
XE B:XE1420 0.0 35.0 0.3
XE B:XE1420 1.1 37.2 0.4
CD2 B:LEU371 3.7 37.5 1.0
CG B:LEU371 3.8 36.2 1.0
CB B:SER260 3.8 29.2 1.0
CG2 B:THR370 3.9 32.3 1.0
CD2 B:LEU257 3.9 31.0 1.0
O B:ILE367 4.2 28.6 1.0
CB B:THR370 4.3 32.7 1.0
CG2 B:ILE367 4.4 30.8 1.0
OG B:SER260 4.5 31.3 1.0
N B:LEU371 4.5 34.4 1.0
O B:LEU257 4.6 28.4 1.0
CD1 B:LEU371 4.7 37.4 1.0
CA B:LEU257 4.8 26.9 1.0
CA B:LEU371 4.8 35.5 1.0
CB B:LEU371 4.9 35.6 1.0
N B:MET261 4.9 31.1 1.0
O B:HOH2238 4.9 38.1 1.0
C B:THR370 5.0 33.8 1.0
C B:ILE367 5.0 29.7 1.0
CG B:MET261 5.0 37.1 1.0
CA B:ILE367 5.0 29.8 1.0

Xenon binding site 10 out of 11 in 1uyu

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Xenon binding site 10 out of 11 in the Xenon Complex of Wildtype P450CAM From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 10 of Xenon Complex of Wildtype P450CAM From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Xe1421

b:39.8
occ:0.20
O B:LEU274 3.6 41.5 1.0
CB B:LEU375 3.8 39.7 1.0
CD1 B:ILE281 4.0 40.0 1.0
CA B:ILE275 4.2 43.0 1.0
OG1 B:THR376 4.2 44.1 1.0
CB B:PRO278 4.2 45.7 1.0
O B:LYS372 4.2 39.0 1.0
C B:LEU274 4.3 41.6 1.0
N B:THR376 4.3 41.5 1.0
N B:ILE275 4.5 42.1 1.0
C B:LEU375 4.5 40.5 1.0
CD1 B:LEU375 4.7 41.0 1.0
O B:ILE275 4.7 43.7 1.0
CA B:PRO278 4.7 45.4 1.0
CA B:LYS372 4.7 38.2 1.0
CA B:LEU375 4.8 39.5 1.0
CA B:THR376 4.9 42.6 1.0
CG1 B:ILE275 4.9 42.9 1.0
O B:LEU371 4.9 36.0 1.0
CG B:LEU375 4.9 40.0 1.0
C B:ILE275 4.9 43.7 1.0
C B:LYS372 4.9 38.4 1.0

Reference:

R.C.Wade, P.J.Winn, I.Schlichting. A Survey of Active Site Access Channels in Cytochromes P450 J.Inorg.Biochem. V. 98 1175 2004.
ISSN: ISSN 0162-0134
PubMed: 15219983
DOI: 10.1016/J.JINORGBIO.2004.02.007
Page generated: Wed Dec 16 02:39:27 2020

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