Xenon in PDB 1u0x: Crystal Structure of Nitrophorin 4 Under Pressure of Xenon (200 Psi)

The structure of Crystal Structure of Nitrophorin 4 Under Pressure of Xenon (200 Psi), PDB code: 1u0x was solved by K.Nienhaus, E.M.Maes, A.Weichsel, W.R.Montfort, G.U.Nienhaus, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.45
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	70.196, 42.461, 52.990, 90.00, 94.24, 90.00
R / Rfree (%)	14.3 / 17.5

The structure of Crystal Structure of Nitrophorin 4 Under Pressure of Xenon (200 Psi) also contains other interesting chemical elements:

Iron

(Fe)

1 atom

The binding sites of Xenon atom in the Crystal Structure of Nitrophorin 4 Under Pressure of Xenon (200 Psi) (pdb code 1u0x). This binding sites where shown within 5.0 Angstroms radius around Xenon atom.
In total 2 binding sites of Xenon where determined in the Crystal Structure of Nitrophorin 4 Under Pressure of Xenon (200 Psi), PDB code: 1u0x:
Jump to Xenon binding site number: 1; 2;

Xenon binding site 1 out of 2 in the Crystal Structure of Nitrophorin 4 Under Pressure of Xenon (200 Psi)


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 1 of Crystal Structure of Nitrophorin 4 Under Pressure of Xenon (200 Psi) within 5.0Å range: probe atom residue distance (Å) B Occ A:Xe187 b:16.5 occ:1.00 CBB A:HEM185 3.4 22.3 1.0 O A:ALA43 3.4 6.5 1.0 C3B A:HEM185 3.5 7.6 1.0 C4B A:HEM185 3.7 8.1 1.0 O A:TYR58 3.7 5.9 1.0 CE1 A:HIS59 3.8 5.3 1.0 CAB A:HEM185 3.9 13.2 1.0 C2B A:HEM185 3.9 8.2 1.0 CB A:ALA42 3.9 8.6 1.0 CB A:LEU57 4.0 6.3 1.0 N A:ALA43 4.0 7.0 1.0 C A:ALA43 4.0 6.9 1.0 CHC A:HEM185 4.0 9.1 1.0 NB A:HEM185 4.1 7.8 1.0 CD2 A:LEU57 4.2 7.6 1.0 ND1 A:HIS59 4.2 5.5 1.0 C1B A:HEM185 4.2 8.9 1.0 N A:TYR58 4.2 5.4 1.0 NE2 A:HIS59 4.4 7.3 1.0 CB A:LEU44 4.5 5.9 0.4 CA A:LEU57 4.5 5.9 1.0 CB A:LEU44 4.5 7.2 0.6 C A:TYR58 4.5 4.9 1.0 CG A:LEU57 4.6 6.3 1.0 CA A:ALA43 4.6 6.7 1.0 C A:ALA42 4.6 6.9 1.0 CMB A:HEM185 4.6 10.2 1.0 CA A:ALA42 4.7 7.0 1.0 CD2 A:LEU44 4.7 11.4 0.6 N A:LEU44 4.8 6.1 0.6 N A:LEU44 4.8 5.9 0.4 CD1 A:LEU57 4.8 9.0 1.0 CD2 A:LEU44 4.8 5.7 0.4 C A:LEU57 4.9 5.9 1.0 CG A:HIS59 4.9 5.7 1.0 C1C A:HEM185 5.0 7.9 1.0

Xenon binding site 2 out of 2 in the Crystal Structure of Nitrophorin 4 Under Pressure of Xenon (200 Psi)


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 2 of Crystal Structure of Nitrophorin 4 Under Pressure of Xenon (200 Psi) within 5.0Å range: probe atom residue distance (Å) B Occ A:Xe188 b:20.3 occ:0.30 CD1 A:LEU130 1.7 18.7 0.7 CG A:LEU130 2.8 18.2 0.7 CB A:LYS125 3.0 15.2 1.0 CB A:LYS128 3.2 26.9 1.0 CD2 A:LEU130 3.4 20.2 0.7 CD A:LYS128 3.5 32.4 1.0 N A:LYS125 3.6 12.9 1.0 O A:LYS125 3.6 17.1 1.0 CD1 A:LEU130 3.7 17.6 0.3 CA A:LYS125 3.7 15.3 1.0 CG A:LYS128 3.9 29.8 1.0 CB A:LEU130 4.0 17.3 0.3 CD2 A:LEU123 4.0 12.7 1.0 CB A:LEU130 4.1 15.7 0.7 O A:HOH322 4.1 15.5 1.0 CG A:LYS125 4.1 16.6 1.0 C A:LYS125 4.1 18.1 1.0 CG A:LEU123 4.2 10.2 1.0 CD A:LYS125 4.2 16.0 1.0 CA A:LYS128 4.4 26.6 1.0 C A:HIS124 4.4 9.6 1.0 CG A:LEU130 4.5 17.7 0.3 C A:LYS128 4.6 24.8 1.0 O A:LEU123 4.6 11.1 1.0 CA A:HIS124 4.8 7.7 1.0 O A:LYS128 4.8 25.9 1.0 C A:LEU123 4.9 8.5 1.0 CGD A:HEM185 4.9 21.9 1.0 CE A:LYS128 4.9 34.1 1.0 N A:LYS128 4.9 26.3 1.0 O1D A:HEM185 4.9 26.2 1.0 CBD A:HEM185 5.0 17.3 1.0 N A:HIS124 5.0 7.7 1.0 CB A:LEU123 5.0 9.0 1.0

K.Nienhaus, E.M.Maes, A.Weichsel, W.R.Montfort, G.U.Nienhaus. Structural Dynamics Controls Nitric Oxide Affinity in Nitrophorin 4 J.Biol.Chem. V. 279 39401 2004.
ISSN: ISSN 0021-9258
PubMed: 15258143
DOI: 10.1074/JBC.M406178200