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Xenon in PDB 1nxt: Micarec pH 4.0

Protein crystallography data

The structure of Micarec pH 4.0, PDB code: 1nxt was solved by C.J.Bent, N.W.Isaacs, T.J.Mitchell, A.Riboldi-Tunnicliffe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.86 / 2.34
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 79.673, 92.829, 36.789, 90.00, 90.00, 90.00
R / Rfree (%) 21.4 / 23.6

Xenon Binding Sites:

The binding sites of Xenon atom in the Micarec pH 4.0 (pdb code 1nxt). This binding sites where shown within 5.0 Angstroms radius around Xenon atom.
In total only one binding site of Xenon was determined in the Micarec pH 4.0, PDB code: 1nxt:

Xenon binding site 1 out of 1 in 1nxt

Go back to Xenon Binding Sites List in 1nxt
Xenon binding site 1 out of 1 in the Micarec pH 4.0


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 1 of Micarec pH 4.0 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe121

b:88.0
occ:1.00
N A:GLU62 3.8 44.6 1.0
CB A:LEU61 3.9 45.5 1.0
OE1 A:GLU62 3.9 59.3 1.0
C A:LEU61 4.0 44.8 1.0
CA A:GLU62 4.1 45.7 1.0
CD1 A:LEU93 4.2 49.2 1.0
NZ A:LYS65 4.2 60.7 1.0
CE A:LYS65 4.2 58.0 1.0
O A:LEU61 4.3 45.0 1.0
OD1 A:ASP59 4.4 58.6 1.0
CD A:LYS65 4.4 54.5 1.0
CB A:GLU62 4.6 46.6 1.0
CA A:LEU61 4.6 45.7 1.0
CD A:GLU62 4.8 55.6 1.0
CG A:LEU93 4.8 47.2 1.0
OD2 A:ASP59 4.9 64.3 1.0
CD1 A:LEU61 5.0 46.1 1.0

Reference:

C.J.Bent, N.W.Isaacs, T.J.Mitchell, A.Riboldi-Tunnicliffe. Crystal Structure of the Response Regulator 02 Receiver Domain, the Essential Yycf Two-Component System of Streptococcus Pneumoniae in Both Complexed and Native States. J.Bacteriol. V. 186 2872 2004.
ISSN: ISSN 0021-9193
PubMed: 15090529
DOI: 10.1128/JB.186.9.2872-2879.2004
Page generated: Wed Dec 16 02:39:23 2020

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