Chemical elements
  Xenon, Xe
    Isotopes
    Energy
    Applications
    Physical Properties
    PDB 1c10-2fic
      1c10
      1c1m
      1c3l
      1c62
      1c65
      1c68
      1c6b
      1c6e
      1c6h
      1c6k
      1c6n
      1c6t
      1e9v
      1fo6
      1fzh
      1fzi
      1gkz
      1i4w
      1j52
      1k4k
      1kqn
      1l0z
      1l1g
      1lls
      1nxt
      1o75
      1rjo
      1rky
      1s56
      1u0x
      1uo6
      1uoc
      1ury
      1uvx
      1uvy
      1ux9
      1uyu
      1vau
      1vgi
      1w2z
      1w53
      1zdm
      2a7a
      2a7b
      2a7c
      2a7d
      2a9r
      2b2j
      2dki
      2fic
    PDB 2ic0-3s3d

Xenon in the structure of Crystal Structure of Nmn/Namn Adenylyltransferase Complexed With Nad (pdb 1kqn)






The binding sites of Xenon atom in the structure of Crystal Structure of Nmn/Namn Adenylyltransferase Complexed With Nad (pdb code 1kqn). This binding sites where shown with 5.0 Angstroms radius around Xenon atom.
The 1kqn structure was solved by T.ZHOU, O.KURNASOV, D.R.TOMCHICK, D.D.BINNS, N.V.GRISHIN, V.E.MARQUEZ, A.L.OSTERMAN, H.ZHANG, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)20.0-2.2
Space groupP1211
a (A)130.816
b (A)90.879
c (A)136.585
alpha (°)90.00
beta (°)116.85
gamma (°)90.00
Rfactor (%)21.8
Rfree (%)25


Xenon Binding Sites:

Xenon binding site 1 out of 15 in 1kqn


Xenon binding site 1 out of 15 in 1kqn
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stereopicture of Xenon binding site 1 out of 15 in 1kqn
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Xenon in the PDB 1kqn. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Xenon atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Ser87, A: Leu88, A: Gln89, A: Lys90, A: Hoh804,

conact list:


AtomAtomDistance (A)
XeO A:Ser873.94
XeC A:Ser874.79
XeO A:Leu883.54
XeN A:Leu884.83
XeCD2 A:Leu884.91
XeC A:Leu883.68
XeCA A:Leu883.94
XeO A:Gln894.25
XeN A:Gln894.33
XeC A:Gln894.29
XeCA A:Gln894.88
XeN A:Lys904.46
XeCG A:Lys904.44
XeCA A:Lys904.60
XeO A:Hoh8043.73

interactive model:


Xenon binding site 2 out of 15 in 1kqn


Xenon binding site 2 out of 15 in 1kqn
Click to enlarge
stereopicture of Xenon binding site 2 out of 15 in 1kqn
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Xenon in the PDB 1kqn. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Xenon atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Met23, A: Arg26, A: Leu27, A: Leu30, A: Val186, A: Glu215, A: Asn219, A: Nad777, A: Hoh790,

conact list:


AtomAtomDistance (A)
XeO A:Met233.62
XeCB A:Met234.85
XeC A:Met234.50
XeCG A:Met233.87
XeSD A:Met234.33
XeCA A:Met234.68
XeCB A:Arg263.97
XeC A:Arg264.42
XeCA A:Arg264.84
XeN A:Leu273.88
XeCB A:Leu274.50
XeCD1 A:Leu273.43
XeCG A:Leu274.62
XeCA A:Leu274.12
XeCD1 A:Leu304.11
XeCG1 A:Val1864.49
XeOE1 A:Glu2153.47
XeOE2 A:Glu2154.16
XeCD A:Glu2153.75
XeCG A:Glu2154.37
XeCB A:Asn2194.36
XeOD1 A:Asn2193.68
XeCG A:Asn2194.27
XeN1A A:Nad7773.95
XeC2A A:Nad7774.09
XeN3A A:Nad7774.91
XeC6A A:Nad7774.73
XeO A:Hoh7904.64

interactive model:


Xenon binding site 3 out of 15 in 1kqn


Xenon binding site 3 out of 15 in 1kqn
Click to enlarge
stereopicture of Xenon binding site 3 out of 15 in 1kqn
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Xenon in the PDB 1kqn. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Xenon atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Phe163, A: Ala164, A: Ile174, A: Phe196, A: Ser200, A: Leu203, A: Hoh783,

conact list:


AtomAtomDistance (A)
XeO A:Phe1634.33
XeCB A:Phe1634.17
XeC A:Phe1634.47
XeN A:Ala1644.64
XeCB A:Ala1644.72
XeCA A:Ala1644.69
XeCD1 A:Ile1744.91
XeCE2 A:Phe1964.11
XeCZ A:Phe1963.90
XeCE1 A:Phe1964.86
XeCB A:Ser2004.11
XeOG A:Ser2003.93
XeCD1 A:Leu2034.47
XeCG A:Leu2034.85
XeO A:Hoh7834.28

interactive model:


Xenon binding site 4 out of 15 in 1kqn


Xenon binding site 4 out of 15 in 1kqn
Click to enlarge
stereopicture of Xenon binding site 4 out of 15 in 1kqn
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Xenon in the PDB 1kqn. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Xenon atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Glu71, B: Hoh844, B: Hoh849, B: Hoh858, B: Hoh873,

conact list:


AtomAtomDistance (A)
XeO B:Glu714.80
XeOE1 B:Glu714.34
XeCB B:Glu714.37
XeCD B:Glu714.70
XeCG B:Glu714.67
XeO B:Hoh8444.47
XeO B:Hoh8494.38
XeO B:Hoh8583.42
XeO B:Hoh8733.44

interactive model:


Xenon binding site 5 out of 15 in 1kqn


Xenon binding site 5 out of 15 in 1kqn
Click to enlarge
stereopicture of Xenon binding site 5 out of 15 in 1kqn
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Xenon in the PDB 1kqn. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Xenon atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Phe163, B: Ala164, B: Phe196, B: Ser200, B: Leu203, B: Hoh808,

conact list:


AtomAtomDistance (A)
XeO B:Phe1634.36
XeCB B:Phe1634.28
XeC B:Phe1634.56
XeN B:Ala1644.84
XeCA B:Ala1644.93
XeCE2 B:Phe1964.36
XeCZ B:Phe1964.29
XeCB B:Ser2003.86
XeOG B:Ser2003.97
XeCD1 B:Leu2034.62
XeO B:Hoh8084.43

interactive model:


Xenon binding site 6 out of 15 in 1kqn


Xenon binding site 6 out of 15 in 1kqn
Click to enlarge
stereopicture of Xenon binding site 6 out of 15 in 1kqn
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Xenon in the PDB 1kqn. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Xenon atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Met23, B: Arg26, B: Leu27, B: Leu30, B: Val186, B: Glu215, B: Nad778, B: Hoh782, B: Hoh870, B: Hoh871,

conact list:


AtomAtomDistance (A)
XeO B:Met233.58
XeCB B:Met234.80
XeC B:Met234.45
XeCG B:Met233.87
XeSD B:Met234.64
XeCA B:Met234.60
XeO B:Arg264.89
XeCB B:Arg264.18
XeC B:Arg264.41
XeCG B:Arg264.33
XeCA B:Arg264.92
XeN B:Leu274.04
XeCB B:Leu274.55
XeCD1 B:Leu273.89
XeCG B:Leu274.51
XeCA B:Leu274.22
XeCD1 B:Leu304.20
XeCG1 B:Val1864.49
XeOE1 B:Glu2153.48
XeOE2 B:Glu2153.79
XeCD B:Glu2153.54
XeCG B:Glu2154.16
XeN1A B:Nad7784.25
XeC2A B:Nad7784.60
XeC6A B:Nad7784.71
XeN6A B:Nad7784.94
XeO B:Hoh7824.67
XeO B:Hoh8704.25
XeO B:Hoh8714.36

interactive model:


Xenon binding site 7 out of 15 in 1kqn


Xenon binding site 7 out of 15 in 1kqn
Click to enlarge
stereopicture of Xenon binding site 7 out of 15 in 1kqn
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Xenon in the PDB 1kqn. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Xenon atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Ala13, B: Phe17, B: His24, B: Leu27, B: Phe28, B: Leu154, B: Nad778, B: Hoh810,

conact list:


AtomAtomDistance (A)
XeCB B:Ala133.81
XeCE2 B:Phe174.46
XeCZ B:Phe174.71
XeO B:His243.67
XeCB B:His244.17
XeND1 B:His244.22
XeC B:His244.29
XeCG B:His244.68
XeCA B:His244.06
XeCB B:Leu273.77
XeCD1 B:Leu274.34
XeCD2 B:Leu273.47
XeCG B:Leu274.06
XeCD1 B:Phe284.40
XeCE1 B:Phe284.10
XeCD1 B:Leu1544.06
XeC4B B:Nad7784.05
XeC5B B:Nad7784.63
XeC1B B:Nad7784.92
XeO4B B:Nad7784.08
XeO B:Hoh8104.96

interactive model:


Xenon binding site 8 out of 15 in 1kqn


Xenon binding site 8 out of 15 in 1kqn
Click to enlarge
stereopicture of Xenon binding site 8 out of 15 in 1kqn
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Xenon in the PDB 1kqn. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Xenon atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Met23, C: Arg26, C: Leu27, C: Leu30, C: Val186, C: Glu215, C: Asn219, C: Nad779, C: Hoh806, C: Hoh815, C: Hoh895,

conact list:


AtomAtomDistance (A)
XeO C:Met233.64
XeCB C:Met234.85
XeC C:Met234.50
XeCG C:Met233.94
XeSD C:Met234.60
XeCA C:Met234.66
XeO C:Arg264.99
XeCB C:Arg263.93
XeC C:Arg264.45
XeCA C:Arg264.83
XeN C:Leu274.09
XeCB C:Leu274.80
XeCD1 C:Leu273.56
XeCG C:Leu274.83
XeCA C:Leu274.38
XeCD1 C:Leu303.81
XeCG1 C:Val1864.43
XeOE1 C:Glu2153.46
XeOE2 C:Glu2153.55
XeCD C:Glu2153.47
XeCG C:Glu2154.26
XeO C:Asn2194.98
XeN1A C:Nad7794.07
XeC2A C:Nad7794.26
XeC6A C:Nad7794.81
XeO C:Hoh8063.27
XeO C:Hoh8154.74
XeO C:Hoh8954.23

interactive model:


Xenon binding site 9 out of 15 in 1kqn


Xenon binding site 9 out of 15 in 1kqn
Click to enlarge
stereopicture of Xenon binding site 9 out of 15 in 1kqn
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 9 of Xenon in the PDB 1kqn. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Xenon atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Phe163, C: Ala164, C: Phe196, C: Ser200, C: Leu203, C: Hoh796,

conact list:


AtomAtomDistance (A)
XeO C:Phe1634.41
XeCB C:Phe1634.44
XeC C:Phe1634.61
XeN C:Ala1644.75
XeCB C:Ala1644.68
XeCA C:Ala1644.71
XeCE2 C:Phe1964.36
XeCZ C:Phe1964.04
XeCE1 C:Phe1964.91
XeCB C:Ser2003.95
XeOG C:Ser2003.83
XeCD1 C:Leu2034.81
XeCG C:Leu2034.95
XeO C:Hoh7964.26

interactive model:


Xenon binding site 10 out of 15 in 1kqn


Xenon binding site 10 out of 15 in 1kqn
Click to enlarge
stereopicture of Xenon binding site 10 out of 15 in 1kqn
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 10 of Xenon in the PDB 1kqn. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Xenon atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Ser87, C: Leu88, C: Gln89, C: Lys90, C: Hoh800, C: Hoh853, C: Hoh905,

conact list:


AtomAtomDistance (A)
XeO C:Ser873.95
XeC C:Ser874.89
XeO C:Leu883.82
XeC C:Leu884.01
XeCA C:Leu884.29
XeO C:Gln893.88
XeN C:Gln894.62
XeC C:Gln894.19
XeN C:Lys904.39
XeCB C:Lys904.86
XeCG C:Lys904.28
XeCA C:Lys904.31
XeO C:Hoh8003.56
XeO C:Hoh8533.89
XeO C:Hoh9053.50

interactive model:


Xenon binding site 11 out of 15 in 1kqn


Xenon binding site 11 out of 15 in 1kqn
Click to enlarge
stereopicture of Xenon binding site 11 out of 15 in 1kqn
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 11 of Xenon in the PDB 1kqn. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Xenon atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Ala13, D: Phe17, D: His24, D: Leu27, D: Phe28, D: Leu154, D: Nad780,

conact list:


AtomAtomDistance (A)
XeCB D:Ala133.84
XeCE2 D:Phe174.26
XeCZ D:Phe174.44
XeO D:His243.56
XeCB D:His244.12
XeND1 D:His244.26
XeC D:His244.20
XeCG D:His244.68
XeCA D:His244.00
XeCB D:Leu273.74
XeCD1 D:Leu274.80
XeCD2 D:Leu273.13
XeCG D:Leu274.00
XeCD1 D:Phe284.49
XeCZ D:Phe284.94
XeCE1 D:Phe284.15
XeO D:Leu1544.97
XeCD1 D:Leu1544.22
XeC4B D:Nad7804.06
XeC5B D:Nad7804.62
XeC1B D:Nad7804.80
XeO4B D:Nad7803.98

interactive model:


Xenon binding site 12 out of 15 in 1kqn


Xenon binding site 12 out of 15 in 1kqn
Click to enlarge
stereopicture of Xenon binding site 12 out of 15 in 1kqn
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 12 of Xenon in the PDB 1kqn. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Xenon atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Met23, D: Arg26, D: Leu27, D: Leu30, D: Val186, D: Glu215, D: Asn219, D: Nad780, D: Hoh785, D: Hoh844, D: Hoh860,

conact list:


AtomAtomDistance (A)
XeO D:Met233.48
XeCB D:Met234.20
XeC D:Met234.21
XeCG D:Met233.28
XeSD D:Met234.21
XeCA D:Met234.24
XeCB D:Arg264.21
XeC D:Arg264.73
XeCG D:Arg264.30
XeN D:Leu274.26
XeCB D:Leu274.75
XeCD1 D:Leu273.56
XeCG D:Leu274.76
XeCA D:Leu274.54
XeCD1 D:Leu304.79
XeCG1 D:Val1864.88
XeOE1 D:Glu2153.50
XeOE2 D:Glu2153.66
XeCD D:Glu2153.65
XeCG D:Glu2154.59
XeCB D:Asn2194.20
XeND2 D:Asn2194.60
XeCG D:Asn2194.94
XeN1A D:Nad7803.91
XeC2A D:Nad7804.30
XeC6A D:Nad7804.40
XeN6A D:Nad7804.64
XeO D:Hoh7854.91
XeO D:Hoh8444.35
XeO D:Hoh8604.38

interactive model:


Xenon binding site 13 out of 15 in 1kqn


Xenon binding site 13 out of 15 in 1kqn
Click to enlarge
stereopicture of Xenon binding site 13 out of 15 in 1kqn
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 13 of Xenon in the PDB 1kqn. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Xenon atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: E: Ala13, E: Phe17, E: His24, E: Leu27, E: Phe28, E: Leu154, E: Nad781,

conact list:


AtomAtomDistance (A)
XeCB E:Ala134.08
XeCE2 E:Phe174.42
XeCZ E:Phe174.63
XeO E:His243.66
XeCB E:His244.21
XeND1 E:His244.34
XeC E:His244.26
XeCG E:His244.78
XeCA E:His244.04
XeCB E:Leu273.37
XeCD1 E:Leu274.88
XeCD2 E:Leu273.14
XeCG E:Leu273.81
XeCA E:Leu274.77
XeCD1 E:Phe284.29
XeCE1 E:Phe284.15
XeCD1 E:Leu1544.56
XeC4B E:Nad7814.11
XeC5B E:Nad7814.77
XeC1B E:Nad7814.73
XeO4B E:Nad7814.03

interactive model:


Xenon binding site 14 out of 15 in 1kqn


Xenon binding site 14 out of 15 in 1kqn
Click to enlarge
stereopicture of Xenon binding site 14 out of 15 in 1kqn
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 14 of Xenon in the PDB 1kqn. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Xenon atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: E: Met23, E: Arg26, E: Leu27, E: Leu30, E: Val186, E: Glu215, E: Nad781, E: Hoh813, E: Hoh849,

conact list:


AtomAtomDistance (A)
XeO E:Met234.01
XeCB E:Met234.85
XeC E:Met234.84
XeCG E:Met233.73
XeSD E:Met234.38
XeCA E:Met234.92
XeCB E:Arg264.39
XeC E:Arg264.77
XeCG E:Arg264.01
XeN E:Leu274.49
XeCD1 E:Leu273.53
XeCG E:Leu274.88
XeCA E:Leu274.66
XeCD1 E:Leu304.54
XeCG1 E:Val1864.54
XeCB E:Glu2154.54
XeOE2 E:Glu2153.90
XeCD E:Glu2154.42
XeCG E:Glu2153.98
XeN1A E:Nad7814.04
XeC2A E:Nad7814.37
XeC6A E:Nad7814.68
XeN6A E:Nad7814.94
XeO E:Hoh8134.25
XeO E:Hoh8493.96

interactive model:


Xenon binding site 15 out of 15 in 1kqn


Xenon binding site 15 out of 15 in 1kqn
Click to enlarge
stereopicture of Xenon binding site 15 out of 15 in 1kqn
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 15 of Xenon in the PDB 1kqn. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Xenon atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: F: Met23, F: Arg26, F: Leu27, F: Leu30, F: Val186, F: Glu215, F: Asn219, F: Nad782, F: Hoh784,

conact list:


AtomAtomDistance (A)
XeO F:Met233.70
XeCB F:Met234.70
XeC F:Met234.49
XeCG F:Met233.68
XeSD F:Met234.23
XeCA F:Met234.61
XeO F:Arg264.93
XeCB F:Arg264.15
XeC F:Arg264.49
XeCG F:Arg264.22
XeCA F:Arg264.95
XeN F:Leu274.20
XeCB F:Leu274.90
XeCD1 F:Leu273.68
XeCG F:Leu274.92
XeCA F:Leu274.44
XeCD1 F:Leu304.41
XeCG1 F:Val1864.58
XeOE1 F:Glu2153.89
XeCB F:Glu2154.83
XeOE2 F:Glu2153.80
XeCD F:Glu2153.97
XeCG F:Glu2154.99
XeCB F:Asn2193.93
XeND2 F:Asn2194.13
XeCG F:Asn2194.28
XeN1A F:Nad7824.00
XeC2A F:Nad7824.28
XeC6A F:Nad7824.70
XeN6A F:Nad7824.99
XeO F:Hoh7844.48

interactive model:




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