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Xenon in PDB 1i4w: The Crystal Structure of the Transcription Factor Sc-Mttfb Offers Intriguing Insights Into Mitochondrial Transcription

Protein crystallography data

The structure of The Crystal Structure of the Transcription Factor Sc-Mttfb Offers Intriguing Insights Into Mitochondrial Transcription, PDB code: 1i4w was solved by F.D.Schubot, C.-J.Chen, J.P.Rose, T.A.Dailey, H.A.Dailey, B.-C.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.88 / 2.60
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 90.418, 44.684, 99.819, 90.00, 110.23, 90.00
R / Rfree (%) 18.7 / 27.4

Xenon Binding Sites:

The binding sites of Xenon atom in the The Crystal Structure of the Transcription Factor Sc-Mttfb Offers Intriguing Insights Into Mitochondrial Transcription (pdb code 1i4w). This binding sites where shown within 5.0 Angstroms radius around Xenon atom.
In total 3 binding sites of Xenon where determined in the The Crystal Structure of the Transcription Factor Sc-Mttfb Offers Intriguing Insights Into Mitochondrial Transcription, PDB code: 1i4w:
Jump to Xenon binding site number: 1; 2; 3;

Xenon binding site 1 out of 3 in 1i4w

Go back to Xenon Binding Sites List in 1i4w
Xenon binding site 1 out of 3 in the The Crystal Structure of the Transcription Factor Sc-Mttfb Offers Intriguing Insights Into Mitochondrial Transcription


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 1 of The Crystal Structure of the Transcription Factor Sc-Mttfb Offers Intriguing Insights Into Mitochondrial Transcription within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe342

b:34.6
occ:0.66
CG A:TYR68 3.6 39.9 1.0
CD1 A:TYR68 3.7 38.6 1.0
CB A:LEU38 3.7 41.4 1.0
CD2 A:TYR68 3.8 38.9 1.0
CZ A:PHE64 3.9 44.2 1.0
CE1 A:TYR68 3.9 36.2 1.0
CG2 A:THR39 4.0 41.1 1.0
CD2 A:LEU48 4.0 32.4 1.0
CE2 A:TYR68 4.1 33.2 1.0
CB A:TYR42 4.1 41.0 1.0
CB A:TYR68 4.1 34.4 1.0
CZ A:TYR68 4.1 37.2 1.0
CE1 A:PHE64 4.2 45.4 1.0
N A:THR39 4.4 45.4 1.0
CD1 A:TYR42 4.4 35.8 1.0
CD1 A:LEU38 4.4 39.2 1.0
CG A:PRO45 4.5 46.7 1.0
CG A:TYR42 4.5 40.5 1.0
C A:LEU38 4.6 47.2 1.0
CB A:PRO45 4.7 52.0 1.0
O A:TYR42 4.7 42.8 1.0
CG A:LEU38 4.7 38.8 1.0
CA A:THR39 4.8 44.6 1.0
CA A:LEU38 4.8 45.7 1.0
CE2 A:PHE64 4.9 40.9 1.0
OH A:TYR68 4.9 40.2 1.0

Xenon binding site 2 out of 3 in 1i4w

Go back to Xenon Binding Sites List in 1i4w
Xenon binding site 2 out of 3 in the The Crystal Structure of the Transcription Factor Sc-Mttfb Offers Intriguing Insights Into Mitochondrial Transcription


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 2 of The Crystal Structure of the Transcription Factor Sc-Mttfb Offers Intriguing Insights Into Mitochondrial Transcription within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe343

b:36.3
occ:0.35
OE1 A:GLN60 3.1 64.4 1.0
CD A:GLN60 3.4 58.1 1.0
NE2 A:GLN60 3.7 54.0 1.0
CD2 A:LEU244 4.0 14.1 1.0
CZ A:PHE33 4.0 55.8 1.0
CE2 A:PHE33 4.0 48.0 1.0
CG A:GLN60 4.2 46.8 1.0
CG2 A:ILE32 4.3 26.0 1.0
CD1 A:LEU36 4.3 15.7 1.0
CD1 A:LEU244 4.4 22.4 1.0
CB A:LEU169 4.5 36.2 1.0
CE2 A:TYR29 4.6 33.1 1.0
CG A:LEU169 4.6 38.0 1.0
NE1 A:TRP171 4.7 35.9 1.0
CD2 A:TYR29 4.7 37.1 1.0
CG A:LEU244 4.8 14.3 1.0
CE1 A:PHE33 4.9 48.5 1.0
CD2 A:PHE33 4.9 44.0 1.0

Xenon binding site 3 out of 3 in 1i4w

Go back to Xenon Binding Sites List in 1i4w
Xenon binding site 3 out of 3 in the The Crystal Structure of the Transcription Factor Sc-Mttfb Offers Intriguing Insights Into Mitochondrial Transcription


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 3 of The Crystal Structure of the Transcription Factor Sc-Mttfb Offers Intriguing Insights Into Mitochondrial Transcription within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe344

b:14.4
occ:0.14
CD2 A:TYR108 3.5 39.8 1.0
CB A:LEU111 3.7 56.9 1.0
CG1 A:ILE112 3.8 36.6 1.0
CE2 A:TYR108 3.8 27.9 1.0
CD2 A:LEU111 3.9 66.0 1.0
CD1 A:LEU51 4.0 28.2 1.0
CD1 A:ILE112 4.1 34.0 1.0
CD2 A:PHE118 4.1 30.4 1.0
CD2 A:LEU51 4.3 32.6 1.0
CG A:LEU51 4.3 31.8 1.0
CB A:PHE118 4.4 37.4 1.0
CG A:LEU111 4.4 62.3 1.0
CD1 A:LEU76 4.5 35.5 1.0
CG A:PHE118 4.5 37.4 1.0
CG A:TYR108 4.6 39.5 1.0
CA A:TYR108 4.6 37.3 1.0
N A:ILE112 4.9 43.7 1.0
CB A:TYR108 4.9 31.1 1.0
CE2 A:PHE118 4.9 28.2 1.0
C A:LEU111 4.9 48.6 1.0
CA A:LEU111 4.9 50.7 1.0
O A:PHE118 5.0 35.3 1.0

Reference:

F.D.Schubot, C.J.Chen, J.P.Rose, T.A.Dailey, H.A.Dailey, B.C.Wang. Crystal Structure of the Transcription Factor Sc-Mttfb Offers Insights Into Mitochondrial Transcription. Protein Sci. V. 10 1980 2001.
ISSN: ISSN 0961-8368
PubMed: 11567089
DOI: 10.1110/PS.11201
Page generated: Wed Dec 16 02:39:20 2020

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