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Xenon in PDB 1fzh: Methane Monooxygenase Hydroxylase, Form II Pressurized with Xenon Gas

Enzymatic activity of Methane Monooxygenase Hydroxylase, Form II Pressurized with Xenon Gas

All present enzymatic activity of Methane Monooxygenase Hydroxylase, Form II Pressurized with Xenon Gas:
1.14.13.25;

Protein crystallography data

The structure of Methane Monooxygenase Hydroxylase, Form II Pressurized with Xenon Gas, PDB code: 1fzh was solved by D.A.Whittington, A.C.Rosenzweig, C.A.Frederick, S.J.Lippard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.00 / 2.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 72.270, 174.620, 223.000, 90.00, 90.00, 90.00
R / Rfree (%) 20.6 / 26

Other elements in 1fzh:

The structure of Methane Monooxygenase Hydroxylase, Form II Pressurized with Xenon Gas also contains other interesting chemical elements:

Iron (Fe) 4 atoms
Calcium (Ca) 4 atoms

Xenon Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Xenon atom in the Methane Monooxygenase Hydroxylase, Form II Pressurized with Xenon Gas (pdb code 1fzh). This binding sites where shown within 5.0 Angstroms radius around Xenon atom.
In total 11 binding sites of Xenon where determined in the Methane Monooxygenase Hydroxylase, Form II Pressurized with Xenon Gas, PDB code: 1fzh:
Jump to Xenon binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Xenon binding site 1 out of 11 in 1fzh

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Xenon binding site 1 out of 11 in the Methane Monooxygenase Hydroxylase, Form II Pressurized with Xenon Gas


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 1 of Methane Monooxygenase Hydroxylase, Form II Pressurized with Xenon Gas within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe9001

b:32.7
occ:0.91
 CD1 A:LEU289 4.1 26.6 1.0
CB A:PHE109 4.1 16.7 1.0
CD2 A:LEU110 4.1 24.8 1.0
CG A:LEU110 4.2 26.6 1.0
SD A:MET184 4.4 31.1 1.0
CA A:VAL106 4.4 21.1 1.0
O A:VAL106 4.4 22.0 1.0
CD2 A:LEU286 4.5 26.5 1.0
CE A:MET184 4.5 29.9 1.0
CE1 A:PHE282 4.6 28.3 1.0
CD2 A:PHE109 4.8 14.7 1.0
O A:VAL105 4.8 19.0 1.0
N A:LEU110 4.9 21.0 1.0
CG1 A:VAL285 4.9 23.9 1.0
CG A:PHE109 4.9 15.4 1.0
C A:VAL106 4.9 21.3 1.0
CD1 A:LEU110 4.9 26.3 1.0

Xenon binding site 2 out of 11 in 1fzh

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Xenon binding site 2 out of 11 in the Methane Monooxygenase Hydroxylase, Form II Pressurized with Xenon Gas


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 2 of Methane Monooxygenase Hydroxylase, Form II Pressurized with Xenon Gas within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe9002

b:32.7
occ:0.38
 CE A:MET288 3.4 30.6 1.0
SD A:MET288 4.0 32.7 1.0
CD2 A:LEU361 4.0 21.4 1.0
CD2 A:LEU289 4.1 29.5 1.0
CG A:MET288 4.3 28.2 1.0
CD1 A:LEU180 4.3 27.7 1.0
CE1 A:PHE359 4.3 21.6 1.0
CE1 A:TYR347 4.3 25.8 1.0
CB A:ALA350 4.4 22.2 1.0
CD1 A:TYR347 4.5 25.7 1.0
CD1 A:LEU361 4.7 24.6 1.0
CZ A:PHE359 4.8 21.8 1.0
CG A:LEU361 5.0 25.6 1.0

Xenon binding site 3 out of 11 in 1fzh

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Xenon binding site 3 out of 11 in the Methane Monooxygenase Hydroxylase, Form II Pressurized with Xenon Gas


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 3 of Methane Monooxygenase Hydroxylase, Form II Pressurized with Xenon Gas within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe9004

b:32.7
occ:0.28
 CE2 A:PHE290 3.3 37.8 1.0
CZ A:PHE290 3.6 36.9 1.0
CD2 A:PHE290 3.6 37.0 1.0
CB A:LEU289 3.6 30.9 1.0
CE1 A:PHE290 3.9 37.0 1.0
CG A:PHE290 4.0 36.8 1.0
CG2 A:VAL106 4.0 17.0 1.0
CD1 A:PHE290 4.1 36.8 1.0
O A:LEU286 4.2 26.8 1.0
CD1 A:LEU289 4.2 26.6 1.0
N A:PHE290 4.2 33.1 1.0
CD1 A:LEU216 4.4 41.1 1.0
C A:LEU289 4.4 32.9 1.0
CG2 A:VAL220 4.5 28.4 1.0
CD2 A:LEU286 4.5 26.5 1.0
CG A:LEU289 4.6 29.5 1.0
CA A:LEU289 4.6 31.8 1.0
CA A:PHE290 4.7 33.4 1.0
CA A:LEU286 4.8 28.0 1.0
CB A:PHE290 4.9 34.7 1.0
C A:LEU286 4.9 29.5 1.0
O A:LEU289 4.9 34.1 1.0

Xenon binding site 4 out of 11 in 1fzh

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Xenon binding site 4 out of 11 in the Methane Monooxygenase Hydroxylase, Form II Pressurized with Xenon Gas


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 4 of Methane Monooxygenase Hydroxylase, Form II Pressurized with Xenon Gas within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe9006

b:32.7
occ:0.34
 NE2 A:HIS149 3.4 21.0 1.0
CG2 A:THR148 3.4 14.1 1.0
CG2 C:VAL177 3.8 11.6 1.0
CD2 A:TYR115 3.8 19.4 1.0
CB A:THR148 3.9 16.7 1.0
CD2 A:HIS149 3.9 21.0 1.0
CE2 A:TYR115 3.9 17.9 1.0
CE1 A:HIS149 4.2 22.7 1.0
OG1 A:THR148 4.3 15.2 1.0
CD1 A:ILE118 4.5 28.3 1.0
CG2 C:THR53 4.5 16.9 1.0
CB C:ASP173 4.7 24.3 1.0
CG2 A:ILE145 4.7 18.9 1.0
O A:ILE145 4.8 27.1 1.0
CB C:ALA56 4.8 21.0 1.0
CG A:HIS149 4.8 21.9 1.0
ND1 A:HIS149 4.9 23.3 1.0

Xenon binding site 5 out of 11 in 1fzh

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Xenon binding site 5 out of 11 in the Methane Monooxygenase Hydroxylase, Form II Pressurized with Xenon Gas


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 5 of Methane Monooxygenase Hydroxylase, Form II Pressurized with Xenon Gas within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe9008

b:32.7
occ:0.24
 CB A:CYS517 3.6 49.1 1.0
N A:PHE519 3.8 36.8 1.0
C A:CYS517 3.8 44.2 1.0
O A:CYS517 3.8 43.8 1.0
CD2 A:LEU405 3.9 38.0 1.0
C A:VAL518 3.9 38.3 1.0
CD2 A:PHE519 3.9 29.5 1.0
CG A:PHE519 4.0 31.1 1.0
N A:VAL518 4.0 42.0 1.0
CE2 A:PHE519 4.1 29.5 1.0
CA A:PHE519 4.1 34.7 1.0
CD1 A:PHE519 4.1 31.7 1.0
CZ A:PHE519 4.2 29.1 1.0
CE1 A:PHE519 4.2 31.4 1.0
XE A:XE9009 4.3 32.7 0.3
O A:VAL518 4.3 39.4 1.0
CA A:CYS517 4.3 46.1 1.0
CA A:VAL518 4.4 39.3 1.0
CB A:LEU478 4.4 28.8 1.0
CD2 A:LEU478 4.6 29.4 1.0
CB A:PHE519 4.6 32.7 1.0
CD1 A:LEU478 4.7 28.3 1.0
CG A:LEU478 4.8 29.6 1.0

Xenon binding site 6 out of 11 in 1fzh

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Xenon binding site 6 out of 11 in the Methane Monooxygenase Hydroxylase, Form II Pressurized with Xenon Gas


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 6 of Methane Monooxygenase Hydroxylase, Form II Pressurized with Xenon Gas within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe9009

b:32.7
occ:0.26
 CD2 A:LEU478 3.8 29.4 1.0
CD2 A:LEU405 3.8 38.0 1.0
CD2 A:LEU353 3.9 26.9 1.0
CD1 A:LEU478 3.9 28.3 1.0
CG2 A:THR356 4.0 23.5 1.0
CD A:PRO355 4.2 24.6 1.0
XE A:XE9008 4.3 32.7 0.2
CZ A:PHE519 4.3 29.1 1.0
CA A:LEU353 4.3 27.3 1.0
CG A:PRO355 4.4 25.9 1.0
CE2 A:PHE519 4.5 29.5 1.0
CB A:PRO355 4.5 25.9 1.0
CG A:LEU478 4.5 29.6 1.0
O A:LEU353 4.7 28.9 1.0
CB A:LEU353 4.7 24.7 1.0
C A:LEU353 4.7 28.4 1.0
CB A:LEU405 4.7 36.7 1.0
O A:ALA352 4.8 28.2 1.0
CG A:LEU405 4.9 38.6 1.0
CG A:LEU353 5.0 26.6 1.0

Xenon binding site 7 out of 11 in 1fzh

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Xenon binding site 7 out of 11 in the Methane Monooxygenase Hydroxylase, Form II Pressurized with Xenon Gas


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 7 of Methane Monooxygenase Hydroxylase, Form II Pressurized with Xenon Gas within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Xe9003

b:32.7
occ:0.92
 CE B:MET184 4.1 28.9 1.0
CD1 B:LEU289 4.2 19.5 1.0
CB B:PHE109 4.2 20.8 1.0
CD2 B:LEU286 4.3 26.2 1.0
CA B:VAL106 4.4 23.3 1.0
SD B:MET184 4.5 29.3 1.0
CE1 B:PHE282 4.5 24.8 1.0
O B:VAL106 4.6 24.0 1.0
CG1 B:VAL285 4.8 22.5 1.0
CD2 B:PHE109 4.8 20.4 1.0
O B:VAL105 5.0 23.7 1.0
CG B:PHE109 5.0 20.1 1.0

Xenon binding site 8 out of 11 in 1fzh

Go back to Xenon Binding Sites List in 1fzh
Xenon binding site 8 out of 11 in the Methane Monooxygenase Hydroxylase, Form II Pressurized with Xenon Gas


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 8 of Methane Monooxygenase Hydroxylase, Form II Pressurized with Xenon Gas within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Xe9005

b:32.7
occ:0.27
 CE2 B:PHE290 3.3 30.7 1.0
CD2 B:PHE290 3.5 30.1 1.0
CZ B:PHE290 3.5 29.5 1.0
CB B:LEU289 3.7 21.8 1.0
CG2 B:VAL106 3.9 19.7 1.0
CE1 B:PHE290 4.0 29.4 1.0
CG B:PHE290 4.0 29.3 1.0
CD2 B:LEU286 4.0 26.2 1.0
O B:LEU286 4.1 28.7 1.0
CD1 B:LEU216 4.1 26.6 1.0
CD1 B:PHE290 4.2 30.5 1.0
CD1 B:LEU289 4.2 19.5 1.0
N B:PHE290 4.4 24.8 1.0
CG2 B:VAL220 4.4 24.1 1.0
CA B:LEU286 4.6 25.7 1.0
CG B:LEU289 4.6 22.6 1.0
C B:LEU289 4.7 23.8 1.0
C B:LEU286 4.8 26.9 1.0
CA B:LEU289 4.8 22.9 1.0
CA B:PHE290 4.9 25.3 1.0
CB B:LEU286 4.9 26.6 1.0
CG1 B:VAL106 4.9 22.0 1.0
CB B:PHE290 4.9 26.2 1.0

Xenon binding site 9 out of 11 in 1fzh

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Xenon binding site 9 out of 11 in the Methane Monooxygenase Hydroxylase, Form II Pressurized with Xenon Gas


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 9 of Methane Monooxygenase Hydroxylase, Form II Pressurized with Xenon Gas within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Xe9007

b:32.7
occ:0.32
 NE2 B:HIS149 3.5 24.6 1.0
CG2 D:VAL177 3.6 25.4 1.0
CG2 B:THR148 3.7 22.6 1.0
CE1 B:HIS149 3.8 23.8 1.0
CD2 B:TYR115 3.9 30.4 1.0
CE2 B:TYR115 3.9 28.0 1.0
CB B:THR148 4.0 24.1 1.0
CD2 B:HIS149 4.2 23.3 1.0
CG2 D:THR53 4.2 25.4 1.0
OG1 B:THR148 4.4 24.7 1.0
CD1 B:ILE118 4.5 27.0 1.0
CB D:ASP173 4.5 31.1 1.0
ND1 B:HIS149 4.5 24.4 1.0
CG2 B:ILE145 4.6 20.8 1.0
CG B:HIS149 4.7 24.8 1.0
O B:ILE145 4.8 25.4 1.0
CB D:ALA56 4.8 27.6 1.0

Xenon binding site 10 out of 11 in 1fzh

Go back to Xenon Binding Sites List in 1fzh
Xenon binding site 10 out of 11 in the Methane Monooxygenase Hydroxylase, Form II Pressurized with Xenon Gas


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 10 of Methane Monooxygenase Hydroxylase, Form II Pressurized with Xenon Gas within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Xe9010

b:32.7
occ:0.30
 CD2 B:PHE519 3.5 28.8 1.0
CG B:PHE519 3.5 28.7 1.0
CE2 B:PHE519 3.5 30.5 1.0
CD2 B:LEU405 3.6 25.2 1.0
N B:PHE519 3.6 29.0 1.0
CD1 B:PHE519 3.6 28.7 1.0
CZ B:PHE519 3.6 30.8 1.0
CE1 B:PHE519 3.7 29.1 1.0
O B:HOH9030 3.8 40.8 1.0
CA B:PHE519 3.9 29.2 1.0
CB B:CYS517 3.9 36.7 1.0
C B:VAL518 4.0 30.1 1.0
C B:CYS517 4.2 32.6 1.0
N B:VAL518 4.2 32.1 1.0
XE B:XE9011 4.2 32.7 0.2
CB B:PHE519 4.3 28.9 1.0
O B:CYS517 4.4 30.6 1.0
O B:VAL518 4.4 30.0 1.0
CA B:VAL518 4.5 30.2 1.0
CB B:LEU478 4.5 28.1 1.0
CD1 B:LEU478 4.6 27.7 1.0
CA B:CYS517 4.6 33.6 1.0
CD2 B:LEU478 4.8 27.0 1.0
CG B:LEU478 4.9 28.0 1.0

Reference:

D.A.Whittington, A.C.Rosenzweig, C.A.Frederick, S.J.Lippard. Xenon and Halogenated Alkanes Track Putative Substrate Binding Cavities in the Soluble Methane Monooxygenase Hydroxylase. Biochemistry V. 40 3476 2001.
ISSN: ISSN 0006-2960
PubMed: 11297413
DOI: 10.1021/BI0022487
Page generated: Sat Oct 12 17:49:39 2024

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