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Xenon in PDB 1c6h: T4 Lysozyme Mutant C54T/C97A/L99A in the Presence of 4 Atm Xenon

Enzymatic activity of T4 Lysozyme Mutant C54T/C97A/L99A in the Presence of 4 Atm Xenon

All present enzymatic activity of T4 Lysozyme Mutant C54T/C97A/L99A in the Presence of 4 Atm Xenon:
3.2.1.17;

Protein crystallography data

The structure of T4 Lysozyme Mutant C54T/C97A/L99A in the Presence of 4 Atm Xenon, PDB code: 1c6h was solved by M.L.Quillin, B.W.Matthews, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 60.00 / 1.90
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 60.947, 60.947, 97.583, 90.00, 90.00, 120.00
R / Rfree (%) n/a / n/a

Other elements in 1c6h:

The structure of T4 Lysozyme Mutant C54T/C97A/L99A in the Presence of 4 Atm Xenon also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Xenon Binding Sites:

The binding sites of Xenon atom in the T4 Lysozyme Mutant C54T/C97A/L99A in the Presence of 4 Atm Xenon (pdb code 1c6h). This binding sites where shown within 5.0 Angstroms radius around Xenon atom.
In total 3 binding sites of Xenon where determined in the T4 Lysozyme Mutant C54T/C97A/L99A in the Presence of 4 Atm Xenon, PDB code: 1c6h:
Jump to Xenon binding site number: 1; 2; 3;

Xenon binding site 1 out of 3 in 1c6h

Go back to Xenon Binding Sites List in 1c6h
Xenon binding site 1 out of 3 in the T4 Lysozyme Mutant C54T/C97A/L99A in the Presence of 4 Atm Xenon


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 1 of T4 Lysozyme Mutant C54T/C97A/L99A in the Presence of 4 Atm Xenon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe500

b:23.0
occ:0.64
XE A:XE502 3.0 34.2 0.1
CB A:ALA99 3.7 10.2 1.0
O A:LEU84 3.9 10.8 1.0
CD2 A:LEU118 4.0 17.8 1.0
CD2 A:LEU84 4.1 20.9 1.0
CB A:VAL87 4.1 18.2 1.0
N A:TYR88 4.1 7.3 1.0
CG1 A:VAL87 4.2 13.8 1.0
CB A:TYR88 4.3 7.8 1.0
CA A:TYR88 4.4 9.8 1.0
CB A:LEU84 4.5 10.7 1.0
CA A:LEU84 4.6 12.0 1.0
C A:VAL87 4.7 9.6 1.0
C A:LEU84 4.7 10.5 1.0
CG A:LEU84 4.8 19.6 1.0
CD1 A:TYR88 4.9 12.9 1.0
CD1 A:LEU91 4.9 11.8 1.0
CA A:VAL87 5.0 9.9 1.0

Xenon binding site 2 out of 3 in 1c6h

Go back to Xenon Binding Sites List in 1c6h
Xenon binding site 2 out of 3 in the T4 Lysozyme Mutant C54T/C97A/L99A in the Presence of 4 Atm Xenon


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 2 of T4 Lysozyme Mutant C54T/C97A/L99A in the Presence of 4 Atm Xenon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe501

b:21.4
occ:0.46
XE A:XE502 2.7 34.2 0.1
CD2 A:LEU118 3.5 17.8 1.0
CD1 A:LEU121 3.9 13.3 1.0
SD A:MET102 3.9 17.0 1.0
CG1 A:VAL111 4.0 16.0 1.0
CD2 A:LEU133 4.1 12.0 1.0
CB A:PHE114 4.1 13.7 1.0
CG A:LEU118 4.1 18.2 1.0
CE A:MET102 4.2 13.9 1.0
CB A:SER117 4.4 11.8 1.0
CG A:PHE114 4.5 15.0 1.0
N A:LEU118 4.7 10.3 1.0
O A:VAL111 4.7 17.1 1.0
CZ A:PHE153 4.8 12.1 1.0
CD2 A:PHE114 4.8 20.5 1.0
CA A:LEU118 4.9 11.6 1.0
O A:PHE114 4.9 14.4 1.0
CE2 A:PHE153 4.9 14.2 1.0
C A:SER117 5.0 12.7 1.0

Xenon binding site 3 out of 3 in 1c6h

Go back to Xenon Binding Sites List in 1c6h
Xenon binding site 3 out of 3 in the T4 Lysozyme Mutant C54T/C97A/L99A in the Presence of 4 Atm Xenon


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 3 of T4 Lysozyme Mutant C54T/C97A/L99A in the Presence of 4 Atm Xenon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe502

b:34.2
occ:0.10
XE A:XE501 2.7 21.4 0.5
XE A:XE500 3.0 23.0 0.6
CD2 A:LEU118 3.6 17.8 1.0
CG1 A:VAL111 3.6 16.0 1.0
CB A:ALA99 3.8 10.2 1.0
CZ A:PHE153 3.9 12.1 1.0
CD1 A:LEU121 4.2 13.3 1.0
CA A:ALA99 4.3 8.0 1.0
SD A:MET102 4.5 17.0 1.0
CE1 A:PHE153 4.6 16.3 1.0
CE2 A:PHE153 4.8 14.2 1.0
CG A:LEU118 5.0 18.2 1.0

Reference:

M.L.Quillin, W.A.Breyer, I.J.Griswold, B.W.Matthews. Size Versus Polarizability in Protein-Ligand Interactions: Binding of Noble Gases Within Engineered Cavities in Phage T4 Lysozyme. J.Mol.Biol. V. 302 955 2000.
ISSN: ISSN 0022-2836
PubMed: 10993735
DOI: 10.1006/JMBI.2000.4063
Page generated: Wed Dec 16 02:39:17 2020

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