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Xenon in PDB 1c10: Crystal Structure of Hew Lysozyme Under Pressure of Xenon (8 Bar)

Enzymatic activity of Crystal Structure of Hew Lysozyme Under Pressure of Xenon (8 Bar)

All present enzymatic activity of Crystal Structure of Hew Lysozyme Under Pressure of Xenon (8 Bar):
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Hew Lysozyme Under Pressure of Xenon (8 Bar), PDB code: 1c10 was solved by T.Prange, M.Schiltz, L.Pernot, N.Colloc'h, S.Longhi, W.Bourguet, R.Fourme, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 9.90 / 2.03
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.530, 78.530, 37.740, 90.00, 90.00, 90.00
R / Rfree (%) 17 / n/a

Other elements in 1c10:

The structure of Crystal Structure of Hew Lysozyme Under Pressure of Xenon (8 Bar) also contains other interesting chemical elements:

Chlorine (Cl) 6 atoms
Sodium (Na) 1 atom

Xenon Binding Sites:

The binding sites of Xenon atom in the Crystal Structure of Hew Lysozyme Under Pressure of Xenon (8 Bar) (pdb code 1c10). This binding sites where shown within 5.0 Angstroms radius around Xenon atom.
In total 3 binding sites of Xenon where determined in the Crystal Structure of Hew Lysozyme Under Pressure of Xenon (8 Bar), PDB code: 1c10:
Jump to Xenon binding site number: 1; 2; 3;

Xenon binding site 1 out of 3 in 1c10

Go back to Xenon Binding Sites List in 1c10
Xenon binding site 1 out of 3 in the Crystal Structure of Hew Lysozyme Under Pressure of Xenon (8 Bar)


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 1 of Crystal Structure of Hew Lysozyme Under Pressure of Xenon (8 Bar) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe150

b:37.1
occ:0.32
OG1 A:THR43 3.5 12.5 1.0
O A:HOH212 3.9 20.8 1.0
CB A:THR43 3.9 9.5 1.0
N A:ARG45 4.0 18.2 1.0
O A:THR43 4.1 12.4 1.0
C A:THR43 4.1 12.1 1.0
N A:ASN44 4.3 20.9 1.0
C A:ASN44 4.4 12.8 1.0
CA A:ASN44 4.4 23.0 1.0
CB A:ARG45 4.4 21.9 1.0
NH2 A:ARG68 4.5 15.9 1.0
NH2 A:ARG45 4.6 61.8 1.0
CG2 A:THR51 4.7 16.1 1.0
CA A:ARG45 4.7 16.8 1.0
NE A:ARG45 4.7 42.4 1.0
CA A:THR43 4.7 11.0 1.0
CZ A:ARG45 5.0 55.0 1.0

Xenon binding site 2 out of 3 in 1c10

Go back to Xenon Binding Sites List in 1c10
Xenon binding site 2 out of 3 in the Crystal Structure of Hew Lysozyme Under Pressure of Xenon (8 Bar)


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 2 of Crystal Structure of Hew Lysozyme Under Pressure of Xenon (8 Bar) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe151

b:34.7
occ:0.28
O A:GLN57 3.7 11.8 1.0
O A:ALA107 3.8 20.2 1.0
NE1 A:TRP108 3.9 10.3 1.0
O A:HOH205 3.9 33.9 1.0
CD1 A:TRP108 4.1 11.3 1.0
N A:ASN59 4.2 12.2 1.0
CA A:ILE58 4.2 7.0 1.0
CE2 A:TRP108 4.3 9.8 1.0
O A:HOH263 4.4 59.2 1.0
CD1 A:ILE98 4.4 20.7 1.0
O A:HOH235 4.5 24.5 1.0
C A:ALA107 4.6 17.3 1.0
C A:GLN57 4.6 11.6 1.0
CG A:TRP108 4.7 15.6 1.0
CB A:ASN59 4.7 17.1 1.0
O A:LEU56 4.7 8.7 1.0
CD2 A:TRP108 4.8 10.5 1.0
C A:ILE58 4.8 16.1 1.0
NE1 A:TRP63 4.8 19.4 1.0
CZ2 A:TRP108 4.8 9.0 1.0
CG2 A:ILE98 4.9 12.9 1.0
CD1 A:TRP63 4.9 19.1 1.0
N A:ILE58 4.9 14.9 1.0
CB A:ALA107 4.9 15.2 1.0

Xenon binding site 3 out of 3 in 1c10

Go back to Xenon Binding Sites List in 1c10
Xenon binding site 3 out of 3 in the Crystal Structure of Hew Lysozyme Under Pressure of Xenon (8 Bar)


Mono view


Stereo pair view

A full contact list of Xenon with other atoms in the Xe binding site number 3 of Crystal Structure of Hew Lysozyme Under Pressure of Xenon (8 Bar) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Xe152

b:40.9
occ:0.15
CG2 A:VAL92 3.1 21.6 1.0
CD1 A:LEU56 3.5 14.8 1.0
CG2 A:ILE55 3.6 19.9 1.0
N A:VAL92 3.7 13.9 1.0
CB A:SER91 3.7 19.1 1.0
C A:SER91 3.9 12.0 1.0
CA A:VAL92 3.9 13.2 1.0
CE A:MET12 4.0 13.1 1.0
O A:ILE88 4.1 21.1 1.0
CG A:LEU56 4.1 17.6 1.0
CB A:VAL92 4.2 20.8 1.0
CB A:ILE88 4.2 13.8 1.0
CD1 A:ILE88 4.3 19.2 1.0
O A:SER91 4.3 18.4 1.0
CA A:SER91 4.4 14.6 1.0
CD2 A:LEU17 4.7 28.0 1.0
CG1 A:ILE88 4.7 17.0 1.0
CG2 A:ILE88 4.9 16.2 1.0
OG A:SER91 4.9 23.9 1.0
CB A:LEU56 4.9 19.5 1.0

Reference:

T.Prange, M.Schiltz, L.Pernot, N.Colloc'h, S.Longhi, W.Bourguet, R.Fourme. Exploring Hydrophobic Sites in Proteins with Xenon or Krypton. Proteins V. 30 61 1998.
ISSN: ISSN 0887-3585
PubMed: 9443341
DOI: 10.1002/(SICI)1097-0134(19980101)30:1<61::AID-PROT6>3.3.CO;2-O
Page generated: Wed Dec 16 02:39:17 2020

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